Rapid builds (Linux only) of a subset of BioC 3.21<BR>Report updated every 6 hours

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	871
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for phyloseq on teran2

To the developers/maintainers of the phyloseq package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: phyloseq

Version: 1.51.0

Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data phyloseq

StartedAt: 2025-04-04 12:27:00 -0400 (Fri, 04 Apr 2025)

EndedAt: 2025-04-04 12:27:01 -0400 (Fri, 04 Apr 2025)

EllapsedTime: 1.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data phyloseq
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* checking for file ‘phyloseq/DESCRIPTION’ ... OK
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/plot_tree.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/prune_samples-methods.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/prune_taxa-methods.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/psmelt.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/rank_names.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/rarefy_even_depth.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/read_tree.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/read_tree_greengenes.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/reconcile_categories.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/refseq-methods.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/rm_outlierf.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/sample_data-class.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/sample_data-methods.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/sample_names-methods.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/sample_sums.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/sample_variables.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/show-methods.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/show_mothur_cutoffs.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/splat.phyloseq.objects.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/subset_ord_plot.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/subset_samples-methods.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/subset_taxa-methods.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/tax_glom.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/tax_table-methods.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/taxa_are_rows-methods.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/taxa_names-methods.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/taxa_sums.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/taxonomyTable-class.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/threshrank.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/threshrankfun.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/tip_glom.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/topf.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/topk.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/topp.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/transformcounts.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/transpose-methods.Rd': No space left on device
cp: error writing '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/man/tree_layout.Rd': No space left on device
cp: cannot create directory '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/tests': No space left on device
cp: cannot create directory '/tmp/RtmplfNAUc/Rbuild2c78b743f568ad/phyloseq/vignettes': No space left on device
 ERROR
copying to build directory failed