Back to Rapid builds (Linux only) of a subset of BioC 3.21
Report updated every 6 hours

This page was generated on 2025-04-05 00:14 -0400 (Sat, 05 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 871
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 122/217HostnameOS / ArchINSTALLBUILDCHECK
karyoploteR 1.33.0  (landing page)
Bernat Gel
Snapshot Date: 2025-04-05 00:00 -0400 (Sat, 05 Apr 2025)
git_url: https://git.bioconductor.org/packages/karyoploteR
git_branch: devel
git_last_commit: 4e6d89c
git_last_commit_date: 2024-10-29 10:16:53 -0400 (Tue, 29 Oct 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR    ERROR  skipped

BUILD results for karyoploteR on teran2

To the developers/maintainers of the karyoploteR package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: karyoploteR
Version: 1.33.0
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data karyoploteR
StartedAt: 2025-04-05 00:12:06 -0400 (Sat, 05 Apr 2025)
EndedAt: 2025-04-05 00:12:07 -0400 (Sat, 05 Apr 2025)
EllapsedTime: 1.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data karyoploteR
###
##############################################################################
##############################################################################


* checking for file ‘karyoploteR/DESCRIPTION’ ... OK
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/getCoordChangeFunctions.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/getCytobandColors.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/getCytobands.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/getDataPanelBoundingBox.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/getDefaultPlotParams.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/getMainTitleBoundingBox.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/getVariantsColors.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpAbline.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpAddBaseNumbers.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpAddChromosomeNames.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpAddChromosomeSeparators.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpAddColorRect.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpAddCytobandLabels.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpAddCytobands.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpAddCytobandsAsLine.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpAddLabels.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpAddMainTitle.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpArea.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpArrows.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpAxis.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpBars.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpDataBackground.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpHeatmap.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpLines.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpPlot2Lines.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpPlotBAMCoverage.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpPlotBAMDensity.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpPlotBigWig.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpPlotCoverage.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpPlotDensity.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpPlotGenes.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpPlotHorizon.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpPlotLinks.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpPlotLoess.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpPlotManhattan.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpPlotMarkers.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpPlotNames.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpPlotRainfall.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpPlotRegions.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpPlotRibbon.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpPlotTranscripts.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpPoints.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpPolygon.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpRect.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpSegments.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/kpText.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/plotDefaultPlotParams.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/plotKaryotype.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/prepareParameters2.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/prepareParameters4.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/sysdata.rda': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/text.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/utils.R': No space left on device
cp: error writing '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/R/zzz.R': No space left on device
cp: cannot create directory '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/inst': No space left on device
cp: cannot create directory '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/man': No space left on device
cp: cannot create directory '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/tests': No space left on device
cp: cannot create directory '/tmp/RtmpSJpogx/Rbuildfcd0671bf5c5c/karyoploteR/vignettes': No space left on device
 ERROR
copying to build directory failed