Rapid builds (Linux only) of a subset of BioC 3.23<BR>Report updated every 6 hours - BUILD results for SingleCellExperiment on teran2

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.6.0 alpha (2026-03-30 r89742)	912
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for SingleCellExperiment on teran2

To the developers/maintainers of the SingleCellExperiment package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: SingleCellExperiment

Version: 1.33.2

Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data SingleCellExperiment

StartedAt: 2026-03-30 14:33:27 -0400 (Mon, 30 Mar 2026)

EndedAt: 2026-03-30 14:33:59 -0400 (Mon, 30 Mar 2026)

EllapsedTime: 32.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data SingleCellExperiment
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* checking for file ‘SingleCellExperiment/DESCRIPTION’ ... OK
* preparing ‘SingleCellExperiment’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘apply.Rmd’ using rmarkdown
--- finished re-building ‘apply.Rmd’

--- re-building ‘devel.Rmd’ using rmarkdown
--- finished re-building ‘devel.Rmd’

--- re-building ‘intro.Rmd’ using rmarkdown

Quitting from intro.Rmd:85-89 [fluidigm]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'scRNAseq'
---
Backtrace:
    ▆
 1. └─base::library(scRNAseq)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'intro.Rmd' failed with diagnostics:
there is no package called 'scRNAseq'
--- failed re-building ‘intro.Rmd’

SUMMARY: processing the following file failed:
  ‘intro.Rmd’

Error: Vignette re-building failed.
Execution halted