Back to Rapid builds (Linux only) of a subset of BioC 3.21
Report updated every 6 hours

This page was generated on 2025-04-04 12:34 -0400 (Fri, 04 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 871
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 178/217HostnameOS / ArchINSTALLBUILDCHECK
Rsamtools 2.23.1  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2025-04-04 12:00 -0400 (Fri, 04 Apr 2025)
git_url: https://git.bioconductor.org/packages/Rsamtools
git_branch: devel
git_last_commit: 21a5945
git_last_commit_date: 2024-11-26 20:26:24 -0400 (Tue, 26 Nov 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped

BUILD results for Rsamtools on teran2

To the developers/maintainers of the Rsamtools package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Rsamtools
Version: 2.23.1
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data Rsamtools
StartedAt: 2025-04-04 12:27:54 -0400 (Fri, 04 Apr 2025)
EndedAt: 2025-04-04 12:27:55 -0400 (Fri, 04 Apr 2025)
EllapsedTime: 1.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data Rsamtools
###
##############################################################################
##############################################################################


* checking for file ‘Rsamtools/DESCRIPTION’ ... OK
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/src/ResultManager.o': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/src/S4Vectors_stubs.o': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/src/XVector_stubs.o': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/src/as_bam.o': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/src/bam.o': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/src/bam_data.o': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/src/bam_mate_iter.o': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/src/bam_plbuf.o': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/src/bam_sort.o': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/src/bambuffer.o': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/src/bamfile.o': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/src/bcffile.o': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/src/bedidx.o': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/src/encode.o': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/src/fafile.o': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/src/idxstats.o': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/src/io_sam.o': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/src/pbuffer_wrapper.o': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/src/pileupbam.o': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/src/sam_opts.o': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/src/sam_utils.o': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/src/samtools_patch.o': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/src/scan_bam_data.o': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/src/tabixfile.o': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/src/tagfilter.o': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/src/utilities.o': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/src/zip_compression.o': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/src/pileup.o': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/src/Rsamtools.so': No space left on device
cp: cannot create directory '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/tests': No space left on device
cp: cannot create directory '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/vignettes': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/LICENSE': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/NEWS': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/README.md': No space left on device
cp: error writing '/tmp/Rtmpfu4dUR/Rbuild2c7ce276ac3eb3/Rsamtools/migration_notes.md': No space left on device
 ERROR
copying to build directory failed