| Back to Rapid builds (Linux only) of a subset of BioC 3.23 Report updated every 6 hours |
This page was generated on 2026-03-11 22:04 -0400 (Wed, 11 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-06 r89561) -- "Unsuffered Consequences" | 903 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 181/230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | |||||||
| Rhdf5lib 1.33.2 (landing page) Hugo Gruson
| teran2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
|
To the developers/maintainers of the Rhdf5lib package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: Rhdf5lib |
| Version: 1.33.2 |
| Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD INSTALL Rhdf5lib |
| StartedAt: 2026-03-11 18:08:56 -0400 (Wed, 11 Mar 2026) |
| EndedAt: 2026-03-11 18:11:42 -0400 (Wed, 11 Mar 2026) |
| EllapsedTime: 165.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD INSTALL Rhdf5lib
###
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* installing to library ‘/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library’
* installing *source* package ‘Rhdf5lib’ ...
** this is package ‘Rhdf5lib’ version ‘1.33.2’
** using staged installation
-- The C compiler identification is GNU 13.3.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Performing Test HAVE_DECL___BUILTIN_CLZLL
-- Performing Test HAVE_DECL___BUILTIN_CLZLL - Success
-- Looking for snprintf
-- Looking for snprintf - found
-- Configuring done (0.5s)
-- Generating done (0.0s)
-- Build files have been written to: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/_build_libaec
[ 11%] Building C object src/CMakeFiles/aec-static-objects.dir/encode.c.o
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[ 33%] Building C object src/CMakeFiles/aec-static-objects.dir/decode.c.o
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[ 88%] Building C object src/CMakeFiles/graec.dir/graec.c.o
[100%] Linking C executable graec
[100%] Built target graec
-- Install configuration: "Release"
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/lib/cmake/libaec/libaec-config.cmake
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/lib/cmake/libaec/libaec-config-version.cmake
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/include/libaec.h
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/include/szlib.h
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/lib/libaec.a
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/lib/libsz.a
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/lib/cmake/libaec/libaec-targets.cmake
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/lib/cmake/libaec/libaec-targets-release.cmake
-- The C compiler identification is GNU 13.3.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- SOVERSION: 103.3.0
-- SOVERSION_TOOLS: 102.0.0
-- SOVERSION_CXX: 103.3.0
-- SOVERSION_F: 102.1.0
-- SOVERSION_HL: 100.1.4
-- SOVERSION_HL_CXX: 100.1.5
-- SOVERSION_HL_F: 100.0.6
-- SOVERSION_JAVA: 100.5.0
-- Looking for include file sys/file.h
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-- Looking for gethostname in ucb;m;dl
-- Looking for gethostname in ucb;m;dl - not found
-- Performing Other Test STDC_HEADERS - Success
-- Performing TEST_LFS_WORKS... yes
-- Performing Other Test HAVE_OFF64_T - Success
-- Looking for lseek64
-- Looking for lseek64 - found
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-- Performing Test HAVE_STAT64_STRUCT
-- Performing Test HAVE_STAT64_STRUCT - Success
-- Looking for stat64
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-- Check size of __int64
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-- Check size of _Bool
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-- Performing Other Test DEV_T_IS_SCALAR - Success
-- Looking for CLOCK_MONOTONIC
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-- Performing Test H5_HAVE_TM_GMTOFF
-- Performing Test H5_HAVE_TM_GMTOFF - Success
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-- Performing Test H5_TIME_WITH_SYS_TIME
-- Performing Test H5_TIME_WITH_SYS_TIME - Success
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-- Performing Test H5_HAVE_STRUCT_TIMEZONE - Failed
-- Looking for gettimeofday
-- Looking for gettimeofday - found
-- Performing Other Test GETTIMEOFDAY_GIVES_TZ - Success
-- Performing Other Test HAVE_TM_ZONE - Failed
-- Performing Other Test HAVE_STRUCT_TM_TM_ZONE - Failed
-- Performing Other Test HAVE_TIMEZONE - Success
-- Performing Test H5_HAVE_STAT_ST_BLOCKS
-- Performing Test H5_HAVE_STAT_ST_BLOCKS - Success
-- Looking for ioctl
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-- Performing Test H5_HAVE_STRUCT_VIDEOCONFIG
-- Performing Test H5_HAVE_STRUCT_VIDEOCONFIG - Failed
-- Performing Test H5_HAVE_STRUCT_TEXT_INFO
-- Performing Test H5_HAVE_STRUCT_TEXT_INFO - Failed
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-- Looking for longjmp
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-- Looking for snprintf
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-- Looking for srandom
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-- Looking for strdup
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-- Looking for vsnprintf
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-- Performing Other Test VSNPRINTF_WORKS - Success
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-- Looking for sigsetjmp - found
-- Performing Other Test HAVE_ATTRIBUTE - Success
-- Performing Other Test HAVE_C99_FUNC - Success
-- Performing Other Test HAVE_FUNCTION - Success
-- Performing Other Test HAVE_C99_DESIGNATED_INITIALIZER - Success
-- Performing Other Test SYSTEM_SCOPE_THREADS - Success
-- Performing Other Test HAVE_SOCKLEN_T - Success
-- Performing Other Test HAVE_INLINE - Success
-- Performing Other Test HAVE___INLINE__ - Success
-- Performing Other Test HAVE___INLINE - Success
-- Checking for appropriate format for 64 bit long:
-- Checking for appropriate format for 64 bit long: found "l"
-- Looking for difftime
-- Looking for difftime - found
-- Looking for clock_gettime
-- Looking for clock_gettime - found
-- Looking for clock_gettime in rt
-- Looking for clock_gettime in rt - found
-- Looking for clock_gettime in posix4
-- Looking for clock_gettime in posix4 - not found
-- Found CURL: /usr/lib/x86_64-linux-gnu/libcurl.so (found version "8.5.0")
-- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libcrypto.so (found version "3.0.13")
-- Check size of __float128
-- Check size of __float128 - done
-- Check size of _Quad
-- Check size of _Quad - failed
-- Checking IF your system converts long double to (unsigned) long values with special algorithm... no
-- Checking IF your system can convert (unsigned) long to long double values with special algorithm... no
-- Checking IF correctly converting long double to (unsigned) long long values... yes
-- Checking IF correctly converting (unsigned) long long to long double values... yes
-- Checking IF the cpu is power9 and cannot correctly converting long double values... no
-- Checking IF alignment restrictions are strictly enforced... yes
-- Warnings Configuration: default: -std=c99 -I/usr/local/include -g -O2 -Wall -Werror=format-security -fpic : -I/usr/local/include -g -O2 -Wall -Werror=format-security -fpic
-- CMAKE_C_FLAGS_GENERAL=-Wall;-Wcast-qual;-Wconversion;-Wextra;-Wfloat-equal;-Wformat=2;-Winit-self;-Winvalid-pch;-Wmissing-include-dirs;-Wno-c++-compat;-Wno-format-nonliteral;-Wshadow;-Wundef;-Wwrite-strings;-pedantic
-- Could NOT find ZLIB (missing: ZLIB_DIR)
-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.3")
-- Filter ZLIB is ON
-- Could NOT find SZIP (missing: SZIP_DIR)
-- Found SZIP: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/lib/libsz.a
-- Filter SZIP is ON
-- The CXX compiler identification is GNU 13.3.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check for STD namespace
-- Check for STD namespace - found
-- Looking for C++ include stdint.h
-- Looking for C++ include stdint.h - found
-- Performing CXX Test OLD_HEADER_FILENAME - Failed
-- Performing CXX Test HDF_NO_NAMESPACE - Failed
-- Performing CXX Test HDF_NO_STD - Failed
-- Performing CXX Test BOOL_NOTDEFINED - Failed
-- Performing CXX Test NO_STATIC_CAST - Failed
-- Performing CXX Test CXX_HAVE_OFFSETOF - Failed
-- Warnings Configuration: CXX default: -I/usr/local/include -g -O2 -Wall -Werror=format-security -fpic
-- CMAKE_CXX_FLAGS_GENERAL=-Wall;-Wcast-qual;-Wconversion;-Wctor-dtor-privacy;-Weffc++;-Wextra;-Wfloat-equal;-Wformat=2;-Winit-self;-Winvalid-pch;-Wmissing-include-dirs;-Wno-format-nonliteral;-Wnon-virtual-dtor;-Wold-style-cast;-Woverloaded-virtual;-Wreorder;-Wshadow;-Wsign-promo;-Wundef;-Wwrite-strings;-pedantic
-- Configuring done (20.5s)
-- Generating done (0.1s)
-- Build files have been written to: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/_build_hdf5
[ 0%] Building C object src/CMakeFiles/H5detect.dir/H5detect.c.o
[ 0%] Linking C executable ../bin/H5detect
[ 0%] Built target H5detect
[ 0%] Building C object src/CMakeFiles/H5make_libsettings.dir/H5make_libsettings.c.o
[ 1%] Linking C executable ../bin/H5make_libsettings
[ 1%] Built target H5make_libsettings
[ 1%] Generating ../H5Tinit.c, ../gen_SRCS.stamp1
[ 1%] Generating ../H5lib_settings.c, ../gen_SRCS.stamp2
[ 1%] Built target gen_hdf5-static
[ 1%] Building C object src/CMakeFiles/hdf5-static.dir/H5.c.o
[ 1%] Building C object src/CMakeFiles/hdf5-static.dir/H5checksum.c.o
[ 2%] Building C object src/CMakeFiles/hdf5-static.dir/H5dbg.c.o
[ 2%] Building C object src/CMakeFiles/hdf5-static.dir/H5mpi.c.o
[ 2%] Building C object src/CMakeFiles/hdf5-static.dir/H5system.c.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5system.c:33:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5system.c: In function ‘H5_build_extpath’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1470:31: warning: ‘__builtin_strncat’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
1470 | #define HDstrncat(X,Y,Z) strncat(X,Y,Z)
| ^~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5system.c:1307:13: note: in expansion of macro ‘HDstrncat’
1307 | HDstrncat(full_path, new_name, HDstrlen(new_name));
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1470:31: note: length computed here
1470 | #define HDstrncat(X,Y,Z) strncat(X,Y,Z)
| ^~~~~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5system.c:1307:13: note: in expansion of macro ‘HDstrncat’
1307 | HDstrncat(full_path, new_name, HDstrlen(new_name));
| ^~~~~~~~~
[ 2%] Building C object src/CMakeFiles/hdf5-static.dir/H5timer.c.o
In file included from /usr/include/stdio.h:980,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:56,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5timer.c:32:
In function ‘sprintf’,
inlined from ‘H5_timer_get_time_string’ at /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5timer.c:658:9:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: warning: ‘minutes’ may be used uninitialized [-Wmaybe-uninitialized]
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5timer.c: In function ‘H5_timer_get_time_string’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5timer.c:602:12: note: ‘minutes’ was declared here
602 | double minutes;
| ^~~~~~~
In function ‘sprintf’,
inlined from ‘H5_timer_get_time_string’ at /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5timer.c:658:9:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: warning: ‘remainder_sec’ may be used uninitialized [-Wmaybe-uninitialized]
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5timer.c: In function ‘H5_timer_get_time_string’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5timer.c:603:12: note: ‘remainder_sec’ was declared here
603 | double remainder_sec;
| ^~~~~~~~~~~~~
In function ‘sprintf’,
inlined from ‘H5_timer_get_time_string’ at /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5timer.c:658:9:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: warning: ‘days’ may be used uninitialized [-Wmaybe-uninitialized]
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5timer.c: In function ‘H5_timer_get_time_string’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5timer.c:600:12: note: ‘days’ was declared here
600 | double days;
| ^~~~
In function ‘sprintf’,
inlined from ‘H5_timer_get_time_string’ at /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5timer.c:658:9:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: warning: ‘hours’ may be used uninitialized [-Wmaybe-uninitialized]
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5timer.c: In function ‘H5_timer_get_time_string’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5timer.c:601:12: note: ‘hours’ was declared here
601 | double hours;
| ^~~~~
[ 3%] Building C object src/CMakeFiles/hdf5-static.dir/H5trace.c.o
[ 3%] Building C object src/CMakeFiles/hdf5-static.dir/H5A.c.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5A.c:25:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5A.c: In function ‘H5Aget_name_by_idx’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1476:31: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation]
1476 | #define HDstrncpy(X,Y,Z) strncpy(X,Y,Z)
| ^~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5A.c:902:9: note: in expansion of macro ‘HDstrncpy’
902 | HDstrncpy(name, attr->shared->name, MIN((size_t)(ret_value + 1), size));
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1467:28: note: length computed here
1467 | #define HDstrlen(S) strlen(S)
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5A.c:898:26: note: in expansion of macro ‘HDstrlen’
898 | ret_value = (ssize_t)HDstrlen(attr->shared->name);
| ^~~~~~~~
[ 3%] Building C object src/CMakeFiles/hdf5-static.dir/H5Abtree2.c.o
[ 4%] Building C object src/CMakeFiles/hdf5-static.dir/H5Adense.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Adense.c: In function ‘H5A__dense_fnd_cb’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Adense.c:314:27: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
314 | H5A_t *old_attr = *user_attr;
| ^
[ 4%] Building C object src/CMakeFiles/hdf5-static.dir/H5Adeprec.c.o
[ 4%] Building C object src/CMakeFiles/hdf5-static.dir/H5Aint.c.o
[ 4%] Building C object src/CMakeFiles/hdf5-static.dir/H5Atest.c.o
[ 5%] Building C object src/CMakeFiles/hdf5-static.dir/H5AC.c.o
[ 5%] Building C object src/CMakeFiles/hdf5-static.dir/H5ACdbg.c.o
[ 5%] Building C object src/CMakeFiles/hdf5-static.dir/H5ACmpio.c.o
[ 5%] Building C object src/CMakeFiles/hdf5-static.dir/H5ACproxy_entry.c.o
[ 6%] Building C object src/CMakeFiles/hdf5-static.dir/H5B.c.o
[ 6%] Building C object src/CMakeFiles/hdf5-static.dir/H5Bcache.c.o
[ 6%] Building C object src/CMakeFiles/hdf5-static.dir/H5Bdbg.c.o
[ 7%] Building C object src/CMakeFiles/hdf5-static.dir/H5B2.c.o
[ 7%] Building C object src/CMakeFiles/hdf5-static.dir/H5B2cache.c.o
[ 7%] Building C object src/CMakeFiles/hdf5-static.dir/H5B2dbg.c.o
[ 7%] Building C object src/CMakeFiles/hdf5-static.dir/H5B2hdr.c.o
[ 8%] Building C object src/CMakeFiles/hdf5-static.dir/H5B2int.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5B2int.c: In function ‘H5B2__iterate_node’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5B2int.c:1521:68: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
1521 | if(NULL == (internal = H5B2__protect_internal(hdr, parent, (H5B2_node_ptr_t *)curr_node, depth, FALSE, H5AC__READ_ONLY_FLAG))) /* Casting away const OK -QAK */
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5B2int.c:1540:60: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
1540 | if(NULL == (leaf = H5B2__protect_leaf(hdr, parent, (H5B2_node_ptr_t *)curr_node, FALSE, H5AC__READ_ONLY_FLAG))) /* Casting away const OK -QAK */
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5B2int.c: In function ‘H5B2__delete_node’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5B2int.c:1630:68: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
1630 | if(NULL == (internal = H5B2__protect_internal(hdr, parent, (H5B2_node_ptr_t *)curr_node, depth, FALSE, H5AC__NO_FLAGS_SET))) /* Casting away const OK -QAK */
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5B2int.c:1647:60: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
1647 | if(NULL == (leaf = H5B2__protect_leaf(hdr, parent, (H5B2_node_ptr_t *)curr_node, FALSE, H5AC__NO_FLAGS_SET))) /* Casting away const OK -QAK */
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5B2int.c: In function ‘H5B2__node_size’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5B2int.c:1706:64: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
1706 | if(NULL == (internal = H5B2__protect_internal(hdr, parent, (H5B2_node_ptr_t *)curr_node, depth, FALSE, H5AC__READ_ONLY_FLAG))) /* Casting away const OK -QAK */
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5B2int.c: In function ‘H5B2__update_flush_depend’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5B2int.c:1808:77: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
1808 | if(NULL == (child_int = H5B2__protect_internal(hdr, new_parent, (H5B2_node_ptr_t *)node_ptr, (uint16_t)(depth - 1), FALSE, H5AC__NO_FLAGS_SET))) /* Casting away const OK -QAK */
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5B2int.c:1824:74: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
1824 | if(NULL == (child_leaf = H5B2__protect_leaf(hdr, new_parent, (H5B2_node_ptr_t *)node_ptr, FALSE, H5AC__NO_FLAGS_SET))) /* Casting away const OK -QAK */
| ^
[ 8%] Building C object src/CMakeFiles/hdf5-static.dir/H5B2internal.c.o
[ 8%] Building C object src/CMakeFiles/hdf5-static.dir/H5B2leaf.c.o
[ 9%] Building C object src/CMakeFiles/hdf5-static.dir/H5B2stat.c.o
[ 9%] Building C object src/CMakeFiles/hdf5-static.dir/H5B2test.c.o
[ 9%] Building C object src/CMakeFiles/hdf5-static.dir/H5C.c.o
[ 9%] Building C object src/CMakeFiles/hdf5-static.dir/H5Cdbg.c.o
[ 10%] Building C object src/CMakeFiles/hdf5-static.dir/H5Cepoch.c.o
[ 10%] Building C object src/CMakeFiles/hdf5-static.dir/H5Cimage.c.o
[ 10%] Building C object src/CMakeFiles/hdf5-static.dir/H5Clog.c.o
[ 10%] Building C object src/CMakeFiles/hdf5-static.dir/H5Clog_json.c.o
[ 11%] Building C object src/CMakeFiles/hdf5-static.dir/H5Clog_trace.c.o
[ 11%] Building C object src/CMakeFiles/hdf5-static.dir/H5Cmpio.c.o
[ 11%] Building C object src/CMakeFiles/hdf5-static.dir/H5Cprefetched.c.o
[ 12%] Building C object src/CMakeFiles/hdf5-static.dir/H5Cquery.c.o
[ 12%] Building C object src/CMakeFiles/hdf5-static.dir/H5Ctag.c.o
[ 12%] Building C object src/CMakeFiles/hdf5-static.dir/H5Ctest.c.o
[ 12%] Building C object src/CMakeFiles/hdf5-static.dir/H5CS.c.o
[ 13%] Building C object src/CMakeFiles/hdf5-static.dir/H5CX.c.o
[ 13%] Building C object src/CMakeFiles/hdf5-static.dir/H5D.c.o
[ 13%] Building C object src/CMakeFiles/hdf5-static.dir/H5Dbtree.c.o
[ 14%] Building C object src/CMakeFiles/hdf5-static.dir/H5Dbtree2.c.o
[ 14%] Building C object src/CMakeFiles/hdf5-static.dir/H5Dchunk.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dchunk.c: In function ‘H5D__chunk_io_init’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dchunk.c:1129:60: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
1129 | if((file_space_normalized = H5S_hyper_normalize_offset((H5S_t *)file_space, old_offset)) < 0)
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dchunk.c:1166:41: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
1166 | if(H5S_hyper_denormalize_offset((H5S_t *)file_space, old_offset) < 0) /* (Casting away const OK -QAK) */
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dchunk.c: In function ‘H5D__create_chunk_map_single’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dchunk.c:1590:26: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
1590 | chunk_info->mspace = (H5S_t *)fm->mem_space;
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dchunk.c: In function ‘H5D__create_chunk_file_map_hyper’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dchunk.c:1873:40: warning: passing argument 1 of ‘H5S_combine_hyperslab’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
1873 | if(H5S_combine_hyperslab(fm->file_space, H5S_SELECT_AND, coords, NULL, fm->chunk_dim, NULL, &tmp_fchunk) < 0)
| ~~^~~~~~~~~~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Rprivate.h:26,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Tprivate.h:32,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Zprivate.h:28,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5CXprivate.h:30,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dchunk.c:55:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Sprivate.h:313:44: note: expected ‘H5S_t *’ but argument is of type ‘const H5S_t *’
313 | H5_DLL herr_t H5S_combine_hyperslab(H5S_t *old_space, H5S_seloper_t op,
| ~~~~~~~^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dchunk.c: In function ‘H5D__create_chunk_mem_map_hyper’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dchunk.c:2023:30: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
2023 | chunk_info->mspace = (H5S_t *)fm->mem_space;
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dchunk.c: In function ‘H5D__create_chunk_mem_map_1d’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dchunk.c:2146:30: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
2146 | chunk_info->mspace = (H5S_t *)fm->mem_space;
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dchunk.c: In function ‘H5D__chunk_allocate’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dchunk.c:4433:17: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
4433 | (void *)pline, (H5MM_free_t)H5D__chunk_mem_xfree, (void *)pline,
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dchunk.c:4433:32: warning: cast between incompatible function types from ‘void * (*)(void *, const H5O_pline_t *)’ to ‘void (*)(void *, void *)’ [-Wcast-function-type]
4433 | (void *)pline, (H5MM_free_t)H5D__chunk_mem_xfree, (void *)pline,
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dchunk.c:4433:67: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
4433 | (void *)pline, (H5MM_free_t)H5D__chunk_mem_xfree, (void *)pline,
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dchunk.c:4482:22: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
4482 | idx_info.storage = sc;
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dchunk.c: In function ‘H5D__chunk_copy_cb’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dchunk.c:6159:111: warning: passing argument 5 of ‘H5D__chunk_file_alloc’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
6159 | if(H5D__chunk_file_alloc(udata->idx_info_dst, NULL, &udata_dst.chunk_block, &need_insert, udata_dst.common.scaled) < 0)
| ~~~~~~~~~~~~~~~~^~~~~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dchunk.c:56:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dpkg.h:653:59: note: expected ‘hsize_t *’ {aka ‘long long unsigned int *’} but argument is of type ‘const hsize_t *’ {aka ‘const long long unsigned int *’}
653 | H5F_block_t *new_chunk, hbool_t *need_insert, hsize_t scaled[]);
| ~~~~~~~~^~~~~~~~
[ 14%] Building C object src/CMakeFiles/hdf5-static.dir/H5Dcompact.c.o
[ 14%] Building C object src/CMakeFiles/hdf5-static.dir/H5Dcontig.c.o
[ 15%] Building C object src/CMakeFiles/hdf5-static.dir/H5Ddbg.c.o
[ 15%] Building C object src/CMakeFiles/hdf5-static.dir/H5Ddeprec.c.o
[ 15%] Building C object src/CMakeFiles/hdf5-static.dir/H5Dearray.c.o
[ 15%] Building C object src/CMakeFiles/hdf5-static.dir/H5Defl.c.o
[ 16%] Building C object src/CMakeFiles/hdf5-static.dir/H5Dfarray.c.o
[ 16%] Building C object src/CMakeFiles/hdf5-static.dir/H5Dfill.c.o
[ 16%] Building C object src/CMakeFiles/hdf5-static.dir/H5Dint.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dint.c: In function ‘H5D__init_type’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dint.c:563:30: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
563 | dset->shared->type = (H5T_t *)type; /* (Cast away const OK - QAK) */
| ^
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dint.c:24:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dint.c: In function ‘H5D_nameof’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dint.c:2230:49: warning: return discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
2230 | FUNC_LEAVE_NOAPI(dataset ? &(dataset->path) : NULL)
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:2437:12: note: in definition of macro ‘FUNC_LEAVE_NOAPI’
2437 | return(ret_value); \
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dint.c: In function ‘H5D_flush_all’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dint.c:3327:52: warning: passing argument 3 of ‘H5I_iterate’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
3327 | if(H5I_iterate(H5I_DATASET, H5D__flush_all_cb, f, FALSE) < 0) /* Casting away const OK -QAK */
| ^
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dint.c:31:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Iprivate.h:70:74: note: expected ‘void *’ but argument is of type ‘const H5F_t *’
70 | H5_DLL herr_t H5I_iterate(H5I_type_t type, H5I_search_func_t func, void *udata, hbool_t app_ref);
| ~~~~~~^~~~~
[ 17%] Building C object src/CMakeFiles/hdf5-static.dir/H5Dio.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dio.c: In function ‘H5D__read’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dio.c:524:66: warning: to be safe all intermediate pointers in cast from ‘void **’ to ‘const void **’ must be ‘const’ qualified [-Wcast-qual]
524 | (unsigned)H5S_GET_EXTENT_NDIMS(file_space), buf, (const void **)&adj_buf, type_info.dst_type_size) < 0)
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dio.c: In function ‘H5D__write’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Dio.c:756:66: warning: to be safe all intermediate pointers in cast from ‘void **’ to ‘const void **’ must be ‘const’ qualified [-Wcast-qual]
756 | (unsigned)H5S_GET_EXTENT_NDIMS(file_space), buf, (const void **)&adj_buf, type_info.src_type_size) < 0)
| ^
[ 17%] Building C object src/CMakeFiles/hdf5-static.dir/H5Dlayout.c.o
[ 17%] Building C object src/CMakeFiles/hdf5-static.dir/H5Dmpio.c.o
[ 17%] Building C object src/CMakeFiles/hdf5-static.dir/H5Dnone.c.o
[ 18%] Building C object src/CMakeFiles/hdf5-static.dir/H5Doh.c.o
[ 18%] Building C object src/CMakeFiles/hdf5-static.dir/H5Dscatgath.c.o
[ 18%] Building C object src/CMakeFiles/hdf5-static.dir/H5Dselect.c.o
[ 19%] Building C object src/CMakeFiles/hdf5-static.dir/H5Dsingle.c.o
[ 19%] Building C object src/CMakeFiles/hdf5-static.dir/H5Dtest.c.o
[ 19%] Building C object src/CMakeFiles/hdf5-static.dir/H5Dvirtual.c.o
[ 19%] Building C object src/CMakeFiles/hdf5-static.dir/H5E.c.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5E.c:52:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5E.c: In function ‘H5Eget_class_name’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1476:31: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation]
1476 | #define HDstrncpy(X,Y,Z) strncpy(X,Y,Z)
| ^~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5E.c:645:8: note: in expansion of macro ‘HDstrncpy’
645 | HDstrncpy(name, cls->cls_name, MIN((size_t)(len + 1), size));
| ^~~~~~~~~
In function ‘H5E__get_class_name’,
inlined from ‘H5Eget_class_name’ at /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5E.c:609:21:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1467:28: note: length computed here
1467 | #define HDstrlen(S) strlen(S)
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5E.c:641:20: note: in expansion of macro ‘HDstrlen’
641 | len = (ssize_t)HDstrlen(cls->cls_name);
| ^~~~~~~~
[ 20%] Building C object src/CMakeFiles/hdf5-static.dir/H5Edeprec.c.o
[ 20%] Building C object src/CMakeFiles/hdf5-static.dir/H5Eint.c.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Eint.c:35:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Eint.c: In function ‘H5E__get_msg’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1476:31: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation]
1476 | #define HDstrncpy(X,Y,Z) strncpy(X,Y,Z)
| ^~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Eint.c:144:8: note: in expansion of macro ‘HDstrncpy’
144 | HDstrncpy(msg_str, msg->msg, MIN((size_t)(len+1), size));
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1467:28: note: length computed here
1467 | #define HDstrlen(S) strlen(S)
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Eint.c:140:20: note: in expansion of macro ‘HDstrlen’
140 | len = (ssize_t)HDstrlen(msg->msg);
| ^~~~~~~~
[ 20%] Building C object src/CMakeFiles/hdf5-static.dir/H5EA.c.o
[ 20%] Building C object src/CMakeFiles/hdf5-static.dir/H5EAcache.c.o
[ 21%] Building C object src/CMakeFiles/hdf5-static.dir/H5EAdbg.c.o
[ 21%] Building C object src/CMakeFiles/hdf5-static.dir/H5EAdblkpage.c.o
[ 21%] Building C object src/CMakeFiles/hdf5-static.dir/H5EAdblock.c.o
[ 22%] Building C object src/CMakeFiles/hdf5-static.dir/H5EAhdr.c.o
[ 22%] Building C object src/CMakeFiles/hdf5-static.dir/H5EAiblock.c.o
[ 22%] Building C object src/CMakeFiles/hdf5-static.dir/H5EAint.c.o
[ 22%] Building C object src/CMakeFiles/hdf5-static.dir/H5EAsblock.c.o
[ 23%] Building C object src/CMakeFiles/hdf5-static.dir/H5EAstat.c.o
[ 23%] Building C object src/CMakeFiles/hdf5-static.dir/H5EAtest.c.o
[ 23%] Building C object src/CMakeFiles/hdf5-static.dir/H5F.c.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5F.c:24:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5F.c: In function ‘H5Fget_name’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1476:31: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation]
1476 | #define HDstrncpy(X,Y,Z) strncpy(X,Y,Z)
| ^~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5F.c:1072:9: note: in expansion of macro ‘HDstrncpy’
1072 | HDstrncpy(name, H5F_OPEN_NAME(f), MIN(len + 1,size));
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1467:28: note: length computed here
1467 | #define HDstrlen(S) strlen(S)
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5F.c:1069:11: note: in expansion of macro ‘HDstrlen’
1069 | len = HDstrlen(H5F_OPEN_NAME(f));
| ^~~~~~~~
[ 24%] Building C object src/CMakeFiles/hdf5-static.dir/H5Faccum.c.o
[ 24%] Building C object src/CMakeFiles/hdf5-static.dir/H5Fcwfs.c.o
[ 24%] Building C object src/CMakeFiles/hdf5-static.dir/H5Fdbg.c.o
[ 24%] Building C object src/CMakeFiles/hdf5-static.dir/H5Fdeprec.c.o
[ 25%] Building C object src/CMakeFiles/hdf5-static.dir/H5Fefc.c.o
[ 25%] Building C object src/CMakeFiles/hdf5-static.dir/H5Ffake.c.o
[ 25%] Building C object src/CMakeFiles/hdf5-static.dir/H5Fint.c.o
[ 25%] Building C object src/CMakeFiles/hdf5-static.dir/H5Fio.c.o
[ 26%] Building C object src/CMakeFiles/hdf5-static.dir/H5Fmount.c.o
[ 26%] Building C object src/CMakeFiles/hdf5-static.dir/H5Fmpi.c.o
[ 26%] Building C object src/CMakeFiles/hdf5-static.dir/H5Fquery.c.o
[ 27%] Building C object src/CMakeFiles/hdf5-static.dir/H5Fsfile.c.o
[ 27%] Building C object src/CMakeFiles/hdf5-static.dir/H5Fspace.c.o
[ 27%] Building C object src/CMakeFiles/hdf5-static.dir/H5Fsuper.c.o
[ 27%] Building C object src/CMakeFiles/hdf5-static.dir/H5Fsuper_cache.c.o
[ 28%] Building C object src/CMakeFiles/hdf5-static.dir/H5Ftest.c.o
[ 28%] Building C object src/CMakeFiles/hdf5-static.dir/H5FA.c.o
[ 28%] Building C object src/CMakeFiles/hdf5-static.dir/H5FAcache.c.o
[ 29%] Building C object src/CMakeFiles/hdf5-static.dir/H5FAdbg.c.o
[ 29%] Building C object src/CMakeFiles/hdf5-static.dir/H5FAdblkpage.c.o
[ 29%] Building C object src/CMakeFiles/hdf5-static.dir/H5FAdblock.c.o
[ 29%] Building C object src/CMakeFiles/hdf5-static.dir/H5FAhdr.c.o
[ 30%] Building C object src/CMakeFiles/hdf5-static.dir/H5FAint.c.o
[ 30%] Building C object src/CMakeFiles/hdf5-static.dir/H5FAstat.c.o
[ 30%] Building C object src/CMakeFiles/hdf5-static.dir/H5FAtest.c.o
[ 30%] Building C object src/CMakeFiles/hdf5-static.dir/H5FD.c.o
[ 31%] Building C object src/CMakeFiles/hdf5-static.dir/H5FDcore.c.o
[ 31%] Building C object src/CMakeFiles/hdf5-static.dir/H5FDdirect.c.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDdirect.c:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDdrvr_module.h:27:25: warning: ‘H5FD__init_package’ declared ‘static’ but never defined [-Wunused-function]
27 | #define H5_MY_PKG H5FD
| ^~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1662:28: note: in definition of macro ‘H5_GLUE’
1662 | #define H5_GLUE(x,y) x##y
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:2498:52: note: in expansion of macro ‘H5_PACKAGE_INIT_FUNC’
2498 | #define H5_PKG_DECLARE_YES_FUNC(pkg) static herr_t H5_PACKAGE_INIT_FUNC(pkg)(void);
| ^~~~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1663:28: note: in expansion of macro ‘H5_PKG_DECLARE_YES_FUNC’
1663 | #define H5_GLUE3(x,y,z) x##y##z
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:2513:1: note: in expansion of macro ‘H5_PKG_DECLARE_FUNC’
2513 | H5_PKG_DECLARE_FUNC(H5_MY_PKG_INIT, H5_MY_PKG)
| ^~~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:2513:37: note: in expansion of macro ‘H5_MY_PKG’
2513 | H5_PKG_DECLARE_FUNC(H5_MY_PKG_INIT, H5_MY_PKG)
| ^~~~~~~~~
[ 31%] Building C object src/CMakeFiles/hdf5-static.dir/H5FDfamily.c.o
[ 32%] Building C object src/CMakeFiles/hdf5-static.dir/H5FDhdfs.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDhdfs.c: In function ‘H5Pget_fapl_hdfs’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDhdfs.c:1761:24: warning: unused parameter ‘fapl_id’ [-Wunused-parameter]
1761 | H5Pget_fapl_hdfs(hid_t fapl_id, H5FD_hdfs_fapl_t *fa_out)
| ~~~~~~^~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDhdfs.c:1761:51: warning: unused parameter ‘fa_out’ [-Wunused-parameter]
1761 | H5Pget_fapl_hdfs(hid_t fapl_id, H5FD_hdfs_fapl_t *fa_out)
| ~~~~~~~~~~~~~~~~~~^~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDhdfs.c: In function ‘H5Pset_fapl_hdfs’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDhdfs.c:1775:24: warning: unused parameter ‘fapl_id’ [-Wunused-parameter]
1775 | H5Pset_fapl_hdfs(hid_t fapl_id, H5FD_hdfs_fapl_t *fa)
| ~~~~~~^~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDhdfs.c:1775:51: warning: unused parameter ‘fa’ [-Wunused-parameter]
1775 | H5Pset_fapl_hdfs(hid_t fapl_id, H5FD_hdfs_fapl_t *fa)
| ~~~~~~~~~~~~~~~~~~^~
[ 32%] Building C object src/CMakeFiles/hdf5-static.dir/H5FDint.c.o
[ 32%] Building C object src/CMakeFiles/hdf5-static.dir/H5FDlog.c.o
[ 32%] Building C object src/CMakeFiles/hdf5-static.dir/H5FDmirror.c.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDmirror.c:20:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDdrvr_module.h:27:25: warning: ‘H5FD__init_package’ declared ‘static’ but never defined [-Wunused-function]
27 | #define H5_MY_PKG H5FD
| ^~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1662:28: note: in definition of macro ‘H5_GLUE’
1662 | #define H5_GLUE(x,y) x##y
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:2498:52: note: in expansion of macro ‘H5_PACKAGE_INIT_FUNC’
2498 | #define H5_PKG_DECLARE_YES_FUNC(pkg) static herr_t H5_PACKAGE_INIT_FUNC(pkg)(void);
| ^~~~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1663:28: note: in expansion of macro ‘H5_PKG_DECLARE_YES_FUNC’
1663 | #define H5_GLUE3(x,y,z) x##y##z
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:2513:1: note: in expansion of macro ‘H5_PKG_DECLARE_FUNC’
2513 | H5_PKG_DECLARE_FUNC(H5_MY_PKG_INIT, H5_MY_PKG)
| ^~~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:2513:37: note: in expansion of macro ‘H5_MY_PKG’
2513 | H5_PKG_DECLARE_FUNC(H5_MY_PKG_INIT, H5_MY_PKG)
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDdrvr_module.h:27:25: warning: ‘H5FD_init_g’ defined but not used [-Wunused-variable]
27 | #define H5_MY_PKG H5FD
| ^~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1662:28: note: in definition of macro ‘H5_GLUE’
1662 | #define H5_GLUE(x,y) x##y
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:2506:56: note: in expansion of macro ‘H5_PACKAGE_INIT_VAR’
2506 | #define H5_PKG_DECLARE_VAR(pkg) static hbool_t H5_PACKAGE_INIT_VAR(pkg);
| ^~~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:2512:1: note: in expansion of macro ‘H5_PKG_DECLARE_VAR’
2512 | H5_PKG_DECLARE_VAR(H5_MY_PKG)
| ^~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:2512:20: note: in expansion of macro ‘H5_MY_PKG’
2512 | H5_PKG_DECLARE_VAR(H5_MY_PKG)
| ^~~~~~~~~
[ 33%] Building C object src/CMakeFiles/hdf5-static.dir/H5FDmpi.c.o
[ 33%] Building C object src/CMakeFiles/hdf5-static.dir/H5FDmpio.c.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDmpio.c:25:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDdrvr_module.h:27:25: warning: ‘H5FD__init_package’ declared ‘static’ but never defined [-Wunused-function]
27 | #define H5_MY_PKG H5FD
| ^~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1662:28: note: in definition of macro ‘H5_GLUE’
1662 | #define H5_GLUE(x,y) x##y
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:2498:52: note: in expansion of macro ‘H5_PACKAGE_INIT_FUNC’
2498 | #define H5_PKG_DECLARE_YES_FUNC(pkg) static herr_t H5_PACKAGE_INIT_FUNC(pkg)(void);
| ^~~~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1663:28: note: in expansion of macro ‘H5_PKG_DECLARE_YES_FUNC’
1663 | #define H5_GLUE3(x,y,z) x##y##z
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:2513:1: note: in expansion of macro ‘H5_PKG_DECLARE_FUNC’
2513 | H5_PKG_DECLARE_FUNC(H5_MY_PKG_INIT, H5_MY_PKG)
| ^~~~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:2513:37: note: in expansion of macro ‘H5_MY_PKG’
2513 | H5_PKG_DECLARE_FUNC(H5_MY_PKG_INIT, H5_MY_PKG)
| ^~~~~~~~~
[ 33%] Building C object src/CMakeFiles/hdf5-static.dir/H5FDmulti.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDmulti.c: In function ‘H5FD_multi_sb_encode’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDmulti.c:692:9: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation]
692 | strncpy((char *)p, file->fa.memb_name[mt], n);
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDmulti.c:691:20: note: length computed here
691 | size_t n = strlen(file->fa.memb_name[mt]) + 1;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 34%] Building C object src/CMakeFiles/hdf5-static.dir/H5FDros3.c.o
[ 34%] Building C object src/CMakeFiles/hdf5-static.dir/H5FDs3comms.c.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDs3comms.c:41:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDs3comms.c: In function ‘H5FD__s3comms_load_aws_creds_from_file’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1476:31: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation]
1476 | #define HDstrncpy(X,Y,Z) strncpy(X,Y,Z)
| ^~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDs3comms.c:2048:17: note: in expansion of macro ‘HDstrncpy’
2048 | HDstrncpy(setting_pointers[setting_i], (const char *)line_buffer, HDstrlen(line_buffer));
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1476:31: note: length computed here
1476 | #define HDstrncpy(X,Y,Z) strncpy(X,Y,Z)
| ^~~~~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDs3comms.c:2048:17: note: in expansion of macro ‘HDstrncpy’
2048 | HDstrncpy(setting_pointers[setting_i], (const char *)line_buffer, HDstrlen(line_buffer));
| ^~~~~~~~~
In file included from /usr/include/string.h:548,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:58:
In function ‘strncpy’,
inlined from ‘H5FD_s3comms_parse_url’ at /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDs3comms.c:2308:5:
/usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: warning: ‘__builtin_strncpy’ destination unchanged after copying no bytes [-Wstringop-truncation]
95 | return __builtin___strncpy_chk (__dest, __src, __len,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
96 | __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~
[ 34%] Building C object src/CMakeFiles/hdf5-static.dir/H5FDsec2.c.o
[ 34%] Building C object src/CMakeFiles/hdf5-static.dir/H5FDspace.c.o
[ 35%] Building C object src/CMakeFiles/hdf5-static.dir/H5FDsplitter.c.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDsplitter.c:22:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDsplitter.c: In function ‘H5FD__splitter_fapl_copy’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1476:31: warning: ‘__builtin_strncpy’ output may be truncated copying 4096 bytes from a string of length 4096 [-Wstringop-truncation]
1476 | #define HDstrncpy(X,Y,Z) strncpy(X,Y,Z)
| ^~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDsplitter.c:599:5: note: in expansion of macro ‘HDstrncpy’
599 | HDstrncpy(new_fa_ptr->wo_path, old_fa_ptr->wo_path, H5FD_SPLITTER_PATH_MAX);
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1476:31: warning: ‘__builtin_strncpy’ output may be truncated copying 4096 bytes from a string of length 4096 [-Wstringop-truncation]
1476 | #define HDstrncpy(X,Y,Z) strncpy(X,Y,Z)
| ^~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDsplitter.c:600:5: note: in expansion of macro ‘HDstrncpy’
600 | HDstrncpy(new_fa_ptr->log_file_path, old_fa_ptr->log_file_path, H5FD_SPLITTER_PATH_MAX);
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDsplitter.c: In function ‘H5FD__splitter_open’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1476:31: warning: ‘__builtin_strncpy’ output may be truncated copying 4096 bytes from a string of length 4096 [-Wstringop-truncation]
1476 | #define HDstrncpy(X,Y,Z) strncpy(X,Y,Z)
| ^~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDsplitter.c:703:5: note: in expansion of macro ‘HDstrncpy’
703 | HDstrncpy(file_ptr->fa.wo_path, fapl_ptr->wo_path, H5FD_SPLITTER_PATH_MAX);
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1476:31: warning: ‘__builtin_strncpy’ output may be truncated copying 4096 bytes from a string of length 4096 [-Wstringop-truncation]
1476 | #define HDstrncpy(X,Y,Z) strncpy(X,Y,Z)
| ^~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDsplitter.c:704:5: note: in expansion of macro ‘HDstrncpy’
704 | HDstrncpy(file_ptr->fa.log_file_path, fapl_ptr->log_file_path, H5FD_SPLITTER_PATH_MAX);
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDsplitter.c: In function ‘H5Pset_fapl_splitter’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1476:31: warning: ‘__builtin_strncpy’ output may be truncated copying 4096 bytes from a string of length 4096 [-Wstringop-truncation]
1476 | #define HDstrncpy(X,Y,Z) strncpy(X,Y,Z)
| ^~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDsplitter.c:346:5: note: in expansion of macro ‘HDstrncpy’
346 | HDstrncpy(info->wo_path, vfd_config->wo_path, H5FD_SPLITTER_PATH_MAX);
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1476:31: warning: ‘__builtin_strncpy’ output may be truncated copying 4096 bytes from a string of length 4096 [-Wstringop-truncation]
1476 | #define HDstrncpy(X,Y,Z) strncpy(X,Y,Z)
| ^~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDsplitter.c:347:5: note: in expansion of macro ‘HDstrncpy’
347 | HDstrncpy(info->log_file_path, vfd_config->log_file_path, H5FD_SPLITTER_PATH_MAX);
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDsplitter.c: In function ‘H5Pget_fapl_splitter’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1476:31: warning: ‘__builtin_strncpy’ output may be truncated copying 4096 bytes from a string of length 4096 [-Wstringop-truncation]
1476 | #define HDstrncpy(X,Y,Z) strncpy(X,Y,Z)
| ^~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDsplitter.c:419:5: note: in expansion of macro ‘HDstrncpy’
419 | HDstrncpy(config_out->wo_path, fapl_ptr->wo_path, H5FD_SPLITTER_PATH_MAX);
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1476:31: warning: ‘__builtin_strncpy’ output may be truncated copying 4096 bytes from a string of length 4096 [-Wstringop-truncation]
1476 | #define HDstrncpy(X,Y,Z) strncpy(X,Y,Z)
| ^~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDsplitter.c:420:5: note: in expansion of macro ‘HDstrncpy’
420 | HDstrncpy(config_out->log_file_path, fapl_ptr->log_file_path, H5FD_SPLITTER_PATH_MAX);
| ^~~~~~~~~
[ 35%] Building C object src/CMakeFiles/hdf5-static.dir/H5FDstdio.c.o
[ 35%] Building C object src/CMakeFiles/hdf5-static.dir/H5FDtest.c.o
[ 35%] Building C object src/CMakeFiles/hdf5-static.dir/H5FDwindows.c.o
[ 36%] Building C object src/CMakeFiles/hdf5-static.dir/H5FL.c.o
[ 36%] Building C object src/CMakeFiles/hdf5-static.dir/H5FO.c.o
[ 36%] Building C object src/CMakeFiles/hdf5-static.dir/H5FS.c.o
[ 37%] Building C object src/CMakeFiles/hdf5-static.dir/H5FScache.c.o
[ 37%] Building C object src/CMakeFiles/hdf5-static.dir/H5FSdbg.c.o
[ 37%] Building C object src/CMakeFiles/hdf5-static.dir/H5FSint.c.o
[ 37%] Building C object src/CMakeFiles/hdf5-static.dir/H5FSsection.c.o
[ 38%] Building C object src/CMakeFiles/hdf5-static.dir/H5FSstat.c.o
[ 38%] Building C object src/CMakeFiles/hdf5-static.dir/H5FStest.c.o
[ 38%] Building C object src/CMakeFiles/hdf5-static.dir/H5G.c.o
[ 39%] Building C object src/CMakeFiles/hdf5-static.dir/H5Gbtree2.c.o
[ 39%] Building C object src/CMakeFiles/hdf5-static.dir/H5Gcache.c.o
[ 39%] Building C object src/CMakeFiles/hdf5-static.dir/H5Gcompact.c.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gcompact.c:28:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gcompact.c: In function ‘H5G__compact_get_name_by_idx’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1476:31: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation]
1476 | #define HDstrncpy(X,Y,Z) strncpy(X,Y,Z)
| ^~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gcompact.c:243:9: note: in expansion of macro ‘HDstrncpy’
243 | HDstrncpy(name, ltable.lnks[idx].name, MIN((size_t)(ret_value + 1), size));
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1467:28: note: length computed here
1467 | #define HDstrlen(S) strlen(S)
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gcompact.c:239:26: note: in expansion of macro ‘HDstrlen’
239 | ret_value = (ssize_t)HDstrlen(ltable.lnks[idx].name);
| ^~~~~~~~
[ 39%] Building C object src/CMakeFiles/hdf5-static.dir/H5Gdense.c.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gdense.c:35:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gdense.c: In function ‘H5G__dense_get_name_by_idx’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1476:31: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation]
1476 | #define HDstrncpy(X,Y,Z) strncpy(X,Y,Z)
| ^~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gdense.c:1222:13: note: in expansion of macro ‘HDstrncpy’
1222 | HDstrncpy(name, ltable.lnks[n].name, MIN((size_t)(ret_value + 1), size));
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1467:28: note: length computed here
1467 | #define HDstrlen(S) strlen(S)
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gdense.c:1218:30: note: in expansion of macro ‘HDstrlen’
1218 | ret_value = (ssize_t)HDstrlen(ltable.lnks[n].name);
| ^~~~~~~~
[ 40%] Building C object src/CMakeFiles/hdf5-static.dir/H5Gdeprec.c.o
[ 40%] Building C object src/CMakeFiles/hdf5-static.dir/H5Gent.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gent.c: In function ‘H5G__ent_copy’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gent.c:338:24: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
338 | H5G__ent_reset((H5G_entry_t *)src);
| ^
[ 40%] Building C object src/CMakeFiles/hdf5-static.dir/H5Gint.c.o
[ 40%] Building C object src/CMakeFiles/hdf5-static.dir/H5Glink.c.o
[ 41%] Building C object src/CMakeFiles/hdf5-static.dir/H5Gloc.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gloc.c: In function ‘H5G__loc_insert’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gloc.c:565:16: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
565 | lnk.name = (char *)name;
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gloc.c: In function ‘H5G__loc_set_comment_cb’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gloc.c:775:21: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
775 | comment.s = (char *)udata->comment;
| ^
[ 41%] Building C object src/CMakeFiles/hdf5-static.dir/H5Gname.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gname.c: In function ‘H5G_name_copy’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gname.c:532:24: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
532 | H5G_name_reset((H5G_name_t *)src);
| ^
[ 41%] Building C object src/CMakeFiles/hdf5-static.dir/H5Gnode.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gnode.c: In function ‘H5G__node_copy’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gnode.c:1255:28: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
1255 | grp_loc.oloc = (H5O_loc_t *)src_oloc;
| ^
[ 42%] Building C object src/CMakeFiles/hdf5-static.dir/H5Gobj.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gobj.c: In function ‘H5G__obj_create_real’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gobj.c:264:67: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
264 | if(H5O_msg_create(oloc, H5O_LINFO_ID, 0, H5O_UPDATE_TIME, (void *)linfo) < 0)
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gobj.c:269:73: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
269 | if(H5O_msg_create(oloc, H5O_GINFO_ID, H5O_MSG_FLAG_CONSTANT, 0, (void *)ginfo) < 0)
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gobj.c:275:77: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
275 | if(H5O_msg_create(oloc, H5O_PLINE_ID, H5O_MSG_FLAG_CONSTANT, 0, (void *)pline) < 0)
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gobj.c: In function ‘H5G_obj_stab_to_new_cb’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gobj.c:422:51: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
422 | if(H5G_obj_insert(udata->grp_oloc, lnk->name, (H5O_link_t *)lnk, FALSE, H5O_TYPE_UNKNOWN, NULL) < 0)
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gobj.c: In function ‘H5G__obj_info’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gobj.c:735:37: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
735 | if(H5O_loc_copy_deep(&grp_oloc, (H5O_loc_t *)oloc) < 0)
| ^
[ 42%] Building C object src/CMakeFiles/hdf5-static.dir/H5Goh.c.o
[ 42%] Building C object src/CMakeFiles/hdf5-static.dir/H5Groot.c.o
[ 42%] Building C object src/CMakeFiles/hdf5-static.dir/H5Gstab.c.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gstab.c:29:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gstab.c: In function ‘H5G__stab_get_name_by_idx’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1476:31: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation]
1476 | #define HDstrncpy(X,Y,Z) strncpy(X,Y,Z)
| ^~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gstab.c:795:9: note: in expansion of macro ‘HDstrncpy’
795 | HDstrncpy(name, udata.name, MIN((size_t)(ret_value + 1), size));
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1467:28: note: length computed here
1467 | #define HDstrlen(S) strlen(S)
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gstab.c:791:26: note: in expansion of macro ‘HDstrlen’
791 | ret_value = (ssize_t)HDstrlen(udata.name);
| ^~~~~~~~
[ 43%] Building C object src/CMakeFiles/hdf5-static.dir/H5Gtest.c.o
[ 43%] Building C object src/CMakeFiles/hdf5-static.dir/H5Gtraverse.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gtraverse.c: In function ‘H5G__traverse_real’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gtraverse.c:726:52: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
726 | if(H5O_msg_reset(H5O_GINFO_ID, (void *)ginfo) < 0)
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gtraverse.c:730:52: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
730 | if(H5O_msg_reset(H5O_LINFO_ID, (void *)linfo) < 0)
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gtraverse.c:734:52: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
734 | if(H5O_msg_reset(H5O_PLINE_ID, (void *)pline) < 0)
| ^
[ 43%] Building C object src/CMakeFiles/hdf5-static.dir/H5HF.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5HF.c: In function ‘H5HF_op_write’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5HF.c:132:17: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
132 | H5MM_memcpy((void *)obj, op_data, obj_len); /* Casting away const OK -QAK */
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5HF.c: In function ‘H5HF_insert’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5HF.c:371:41: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
371 | if(H5HF__huge_insert(hdr, size, (void *)obj, id) < 0)
| ^
[ 44%] Building C object src/CMakeFiles/hdf5-static.dir/H5HFbtree2.c.o
[ 44%] Building C object src/CMakeFiles/hdf5-static.dir/H5HFcache.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5HFcache.c: In function ‘H5HF__cache_hdr_serialize’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5HFcache.c:770:12: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
770 | hdr->f = f;
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5HFcache.c: In function ‘H5HF__cache_iblock_serialize’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5HFcache.c:1360:12: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
1360 | hdr->f = f;
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5HFcache.c: In function ‘H5HF__cache_dblock_verify_chksum’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5HFcache.c:1689:20: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
1689 | read_buf = (void *)image; /* Casting away const OK - QAK */
| ^
[ 44%] Building C object src/CMakeFiles/hdf5-static.dir/H5HFdbg.c.o
[ 44%] Building C object src/CMakeFiles/hdf5-static.dir/H5HFdblock.c.o
[ 45%] Building C object src/CMakeFiles/hdf5-static.dir/H5HFdtable.c.o
[ 45%] Building C object src/CMakeFiles/hdf5-static.dir/H5HFhdr.c.o
[ 45%] Building C object src/CMakeFiles/hdf5-static.dir/H5HFhuge.c.o
[ 45%] Building C object src/CMakeFiles/hdf5-static.dir/H5HFiblock.c.o
[ 46%] Building C object src/CMakeFiles/hdf5-static.dir/H5HFiter.c.o
[ 46%] Building C object src/CMakeFiles/hdf5-static.dir/H5HFman.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5HFman.c: In function ‘H5HF__man_write’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5HFman.c:500:50: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
500 | if(H5HF__man_op_real(hdr, id, H5HF_op_write, (void *)obj, H5HF_OP_MODIFY) < 0)
| ^
[ 46%] Building C object src/CMakeFiles/hdf5-static.dir/H5HFsection.c.o
[ 47%] Building C object src/CMakeFiles/hdf5-static.dir/H5HFspace.c.o
[ 47%] Building C object src/CMakeFiles/hdf5-static.dir/H5HFstat.c.o
[ 47%] Building C object src/CMakeFiles/hdf5-static.dir/H5HFtest.c.o
[ 47%] Building C object src/CMakeFiles/hdf5-static.dir/H5HFtiny.c.o
[ 48%] Building C object src/CMakeFiles/hdf5-static.dir/H5HG.c.o
[ 48%] Building C object src/CMakeFiles/hdf5-static.dir/H5HGcache.c.o
[ 48%] Building C object src/CMakeFiles/hdf5-static.dir/H5HGdbg.c.o
[ 49%] Building C object src/CMakeFiles/hdf5-static.dir/H5HGquery.c.o
[ 49%] Building C object src/CMakeFiles/hdf5-static.dir/H5HL.c.o
[ 49%] Building C object src/CMakeFiles/hdf5-static.dir/H5HLcache.c.o
[ 49%] Building C object src/CMakeFiles/hdf5-static.dir/H5HLdbg.c.o
[ 50%] Building C object src/CMakeFiles/hdf5-static.dir/H5HLdblk.c.o
[ 50%] Building C object src/CMakeFiles/hdf5-static.dir/H5HLint.c.o
[ 50%] Building C object src/CMakeFiles/hdf5-static.dir/H5HLprfx.c.o
[ 50%] Building C object src/CMakeFiles/hdf5-static.dir/H5HP.c.o
[ 51%] Building C object src/CMakeFiles/hdf5-static.dir/H5I.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5I.c: In function ‘H5I__clear_type_cb’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5I.c:548:81: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
548 | if(udata->type_ptr->cls->free_func && (udata->type_ptr->cls->free_func)((void *)id->obj_ptr) < 0) { /* (Casting away const OK -QAK) */
| ^
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5I.c:37:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5I.c: In function ‘H5I__destroy_type’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5I.c:654:48: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
654 | type_ptr->cls = H5FL_FREE(H5I_class_t, (void *)type_ptr->cls);
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FLprivate.h:128:65: note: in definition of macro ‘H5FL_FREE’
128 | #define H5FL_FREE(t,obj) (t *)H5FL_reg_free(&(H5FL_REG_NAME(t)),obj)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5I.c: In function ‘H5I_subst’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5I.c:850:17: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
850 | ret_value = (void *)id_ptr->obj_ptr; /* (Casting away const OK -QAK) */
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5I.c: In function ‘H5I_object’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5I.c:883:21: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
883 | ret_value = (void *)id_ptr->obj_ptr; /* (Casting away const OK -QAK) */
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5I.c: In function ‘H5I_object_verify’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5I.c:952:21: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
952 | ret_value = (void *)id_ptr->obj_ptr; /* (Casting away const OK -QAK) */
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5I.c: In function ‘H5I__remove_common’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5I.c:1125:17: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
1125 | ret_value = (void *)curr_id->obj_ptr; /* (Casting away const OK -QAK) */
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5I.c: In function ‘H5I_dec_ref’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5I.c:1261:68: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
1261 | if(!type_ptr->cls->free_func || (type_ptr->cls->free_func)((void *)id_ptr->obj_ptr) >= 0) {
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5I.c: In function ‘H5I__iterate_cb’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5I.c:1877:42: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
1877 | cb_ret_val = (*udata->user_func)((void *)item->obj_ptr, item->id, udata->user_udata); /* (Casting away const OK) */
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5I.c: In function ‘H5I__id_dump_cb’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5I.c:2135:31: warning: passing argument 1 of ‘H5G_nameof’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
2135 | path = H5G_nameof((const H5G_t *)item->obj_ptr);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Tprivate.h:31,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Zprivate.h:28,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5CXprivate.h:30,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5I.c:34:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Gprivate.h:190:39: note: expected ‘H5G_t *’ but argument is of type ‘const H5G_t *’
190 | H5_DLL H5G_name_t * H5G_nameof(H5G_t *grp);
| ~~~~~~~^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5I.c: At top level:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5I.c:125:12: warning: ‘H5I__debug_cb’ declared ‘static’ but never defined [-Wunused-function]
125 | static int H5I__debug_cb(void *_item, void *_key, void *_udata);
| ^~~~~~~~~~~~~
[ 51%] Building C object src/CMakeFiles/hdf5-static.dir/H5Itest.c.o
[ 51%] Building C object src/CMakeFiles/hdf5-static.dir/H5L.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5L.c: In function ‘H5L__link_cb’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5L.c:1685:24: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
1685 | udata->lnk->name = (char *)name;
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5L.c: In function ‘H5L__move_dest_cb’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5L.c:2477:24: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
2477 | udata->lnk->name = (char *)name;
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5L.c: In function ‘H5L__link_copy_file’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5L.c:3231:28: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
3231 | lnk_grp_loc.oloc = (H5O_loc_t *)src_oloc; /* Casting away const OK -QAK */
| ^
[ 52%] Building C object src/CMakeFiles/hdf5-static.dir/H5Lexternal.c.o
[ 52%] Building C object src/CMakeFiles/hdf5-static.dir/H5MF.c.o
[ 52%] Building C object src/CMakeFiles/hdf5-static.dir/H5MFaggr.c.o
[ 52%] Building C object src/CMakeFiles/hdf5-static.dir/H5MFdbg.c.o
[ 53%] Building C object src/CMakeFiles/hdf5-static.dir/H5MFsection.c.o
[ 53%] Building C object src/CMakeFiles/hdf5-static.dir/H5MM.c.o
[ 53%] Building C object src/CMakeFiles/hdf5-static.dir/H5MP.c.o
[ 54%] Building C object src/CMakeFiles/hdf5-static.dir/H5MPtest.c.o
[ 54%] Building C object src/CMakeFiles/hdf5-static.dir/H5O.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5O.c: In function ‘H5Oget_info_by_idx’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5O.c:1169:17: warning: unused variable ‘obj_oloc’ [-Wunused-variable]
1169 | H5O_loc_t obj_oloc; /* Opened object object location */
| ^~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5O.c:1168:17: warning: unused variable ‘obj_path’ [-Wunused-variable]
1168 | H5G_name_t obj_path; /* Opened object group hier. path */
| ^~~~~~~~
[ 54%] Building C object src/CMakeFiles/hdf5-static.dir/H5Oainfo.c.o
[ 54%] Building C object src/CMakeFiles/hdf5-static.dir/H5Oalloc.c.o
[ 55%] Building C object src/CMakeFiles/hdf5-static.dir/H5Oattr.c.o
[ 55%] Building C object src/CMakeFiles/hdf5-static.dir/H5Oattribute.c.o
[ 55%] Building C object src/CMakeFiles/hdf5-static.dir/H5Obogus.c.o
[ 55%] Building C object src/CMakeFiles/hdf5-static.dir/H5Obtreek.c.o
[ 56%] Building C object src/CMakeFiles/hdf5-static.dir/H5Ocache.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ocache.c: In function ‘H5O__chunk_deserialize’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ocache.c:1464:25: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
1464 | mesg->raw = (uint8_t *)chunk_image; /* Casting away const OK - QAK */
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ocache.c: In function ‘H5O__chunk_serialize’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ocache.c:1666:30: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
1666 | if(H5O_msg_flush((H5F_t *)f, oh, curr_msg) < 0)
| ^
[ 56%] Building C object src/CMakeFiles/hdf5-static.dir/H5Ocache_image.c.o
[ 56%] Building C object src/CMakeFiles/hdf5-static.dir/H5Ochunk.c.o
[ 57%] Building C object src/CMakeFiles/hdf5-static.dir/H5Ocont.c.o
[ 57%] Building C object src/CMakeFiles/hdf5-static.dir/H5Ocopy.c.o
[ 57%] Building C object src/CMakeFiles/hdf5-static.dir/H5Odbg.c.o
[ 57%] Building C object src/CMakeFiles/hdf5-static.dir/H5Odeprec.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Odeprec.c: In function ‘H5Oget_info_by_idx1’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Odeprec.c:175:17: warning: unused variable ‘obj_oloc’ [-Wunused-variable]
175 | H5O_loc_t obj_oloc; /* Opened object object location */
| ^~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Odeprec.c:174:17: warning: unused variable ‘obj_path’ [-Wunused-variable]
174 | H5G_name_t obj_path; /* Opened object group hier. path */
| ^~~~~~~~
[ 58%] Building C object src/CMakeFiles/hdf5-static.dir/H5Odrvinfo.c.o
[ 58%] Building C object src/CMakeFiles/hdf5-static.dir/H5Odtype.c.o
[ 58%] Building C object src/CMakeFiles/hdf5-static.dir/H5Oefl.c.o
[ 59%] Building C object src/CMakeFiles/hdf5-static.dir/H5Ofill.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ofill.c: In function ‘H5O_fill_old_decode’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ofill.c:347:71: warning: ordered comparison of pointer with integer zero [-Wpedantic]
347 | if((dt = H5O_msg_read_oh(f, open_oh, H5O_DTYPE_ID, NULL)) < 0)
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ofill.c:350:27: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
350 | if(fill->size != H5T_GET_SIZE(dt))
| ^~
[ 59%] Building C object src/CMakeFiles/hdf5-static.dir/H5Oflush.c.o
[ 59%] Building C object src/CMakeFiles/hdf5-static.dir/H5Ofsinfo.c.o
[ 59%] Building C object src/CMakeFiles/hdf5-static.dir/H5Oginfo.c.o
[ 60%] Building C object src/CMakeFiles/hdf5-static.dir/H5Oint.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Oint.c: In function ‘H5O_create’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Oint.c:285:17: warning: unused variable ‘store_msg_crt_idx’ [-Wunused-variable]
285 | hbool_t store_msg_crt_idx; /* Whether to always store message crea tion indices for this file */
| ^~~~~~~~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Oint.c:284:17: warning: unused variable ‘insert_flags’ [-Wunused-variable]
284 | unsigned insert_flags = H5AC__NO_FLAGS_SET; /* Flags for inserting objec t header into cache */
| ^~~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Oint.c:283:16: warning: unused variable ‘oh_flags’ [-Wunused-variable]
283 | uint8_t oh_flags; /* Object header's initial status flags */
| ^~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Oint.c:282:17: warning: unused variable ‘oh_size’ [-Wunused-variable]
282 | size_t oh_size; /* Size of initial object header */
| ^~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Oint.c:281:17: warning: unused variable ‘oh_addr’ [-Wunused-variable]
281 | haddr_t oh_addr; /* Address of initial object header */
| ^~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Oint.c:278:22: warning: unused variable ‘oc_plist’ [-Wunused-variable]
278 | H5P_genplist_t *oc_plist; /* Object creation property list */
| ^~~~~~~~
[ 60%] Building C object src/CMakeFiles/hdf5-static.dir/H5Olayout.c.o
[ 60%] Building C object src/CMakeFiles/hdf5-static.dir/H5Olinfo.c.o
[ 60%] Building C object src/CMakeFiles/hdf5-static.dir/H5Olink.c.o
[ 61%] Building C object src/CMakeFiles/hdf5-static.dir/H5Omessage.c.o
[ 61%] Building C object src/CMakeFiles/hdf5-static.dir/H5Omtime.c.o
[ 61%] Building C object src/CMakeFiles/hdf5-static.dir/H5Oname.c.o
[ 62%] Building C object src/CMakeFiles/hdf5-static.dir/H5Onull.c.o
[ 62%] Building C object src/CMakeFiles/hdf5-static.dir/H5Opline.c.o
[ 62%] Building C object src/CMakeFiles/hdf5-static.dir/H5Orefcount.c.o
[ 62%] Building C object src/CMakeFiles/hdf5-static.dir/H5Osdspace.c.o
[ 63%] Building C object src/CMakeFiles/hdf5-static.dir/H5Oshared.c.o
[ 63%] Building C object src/CMakeFiles/hdf5-static.dir/H5Oshmesg.c.o
[ 63%] Building C object src/CMakeFiles/hdf5-static.dir/H5Ostab.c.o
[ 64%] Building C object src/CMakeFiles/hdf5-static.dir/H5Otest.c.o
[ 64%] Building C object src/CMakeFiles/hdf5-static.dir/H5Ounknown.c.o
[ 64%] Building C object src/CMakeFiles/hdf5-static.dir/H5P.c.o
[ 64%] Building C object src/CMakeFiles/hdf5-static.dir/H5Pacpl.c.o
[ 65%] Building C object src/CMakeFiles/hdf5-static.dir/H5Pdapl.c.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Pdapl.c:35:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Pdapl.c: In function ‘H5Pget_efile_prefix’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1476:31: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation]
1476 | #define HDstrncpy(X,Y,Z) strncpy(X,Y,Z)
| ^~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Pdapl.c:1482:13: note: in expansion of macro ‘HDstrncpy’
1482 | HDstrncpy(prefix, my_prefix, MIN(len + 1, size));
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1467:28: note: length computed here
1467 | #define HDstrlen(S) strlen(S)
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Pdapl.c:1480:15: note: in expansion of macro ‘HDstrlen’
1480 | len = HDstrlen(my_prefix);
| ^~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Pdapl.c: In function ‘H5Pget_virtual_prefix’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1476:31: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation]
1476 | #define HDstrncpy(X,Y,Z) strncpy(X,Y,Z)
| ^~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Pdapl.c:1574:13: note: in expansion of macro ‘HDstrncpy’
1574 | HDstrncpy(prefix, my_prefix, MIN(len + 1, size));
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1467:28: note: length computed here
1467 | #define HDstrlen(S) strlen(S)
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Pdapl.c:1572:15: note: in expansion of macro ‘HDstrlen’
1572 | len = HDstrlen(my_prefix);
| ^~~~~~~~
[ 65%] Building C object src/CMakeFiles/hdf5-static.dir/H5Pdcpl.c.o
[ 65%] Building C object src/CMakeFiles/hdf5-static.dir/H5Pdeprec.c.o
[ 65%] Building C object src/CMakeFiles/hdf5-static.dir/H5Pdxpl.c.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Pdxpl.c:35:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Pdxpl.c: In function ‘H5Pget_data_transform’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1476:31: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation]
1476 | #define HDstrncpy(X,Y,Z) strncpy(X,Y,Z)
| ^~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Pdxpl.c:1019:9: note: in expansion of macro ‘HDstrncpy’
1019 | HDstrncpy(expression, pexp, MIN(len + 1, size));
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1467:28: note: length computed here
1467 | #define HDstrlen(S) strlen(S)
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Pdxpl.c:1017:11: note: in expansion of macro ‘HDstrlen’
1017 | len = HDstrlen(pexp);
| ^~~~~~~~
[ 66%] Building C object src/CMakeFiles/hdf5-static.dir/H5Pencdec.c.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Pencdec.c:29:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Pencdec.c: In function ‘H5P__encode_cb’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1476:31: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation]
1476 | #define HDstrncpy(X,Y,Z) strncpy(X,Y,Z)
| ^~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Pencdec.c:351:13: note: in expansion of macro ‘HDstrncpy’
351 | HDstrncpy((char *)*(udata->pp), prop->name, prop_name_len);
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1467:28: note: length computed here
1467 | #define HDstrlen(S) strlen(S)
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Pencdec.c:349:25: note: in expansion of macro ‘HDstrlen’
349 | prop_name_len = HDstrlen(prop->name) + 1;
| ^~~~~~~~
[ 66%] Building C object src/CMakeFiles/hdf5-static.dir/H5Pfapl.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Pfapl.c: In function ‘H5P__file_driver_free’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Pfapl.c:1141:44: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
1141 | if((driver->fapl_free)((void *)info->driver_info) < 0) /* Casting away const OK -QAK */
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Pfapl.c:1145:32: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
1145 | H5MM_xfree((void *)info->driver_info); /* Casting away const OK -QAK */
| ^
[ 66%] Building C object src/CMakeFiles/hdf5-static.dir/H5Pfcpl.c.o
[ 67%] Building C object src/CMakeFiles/hdf5-static.dir/H5Pfmpl.c.o
[ 67%] Building C object src/CMakeFiles/hdf5-static.dir/H5Pgcpl.c.o
[ 67%] Building C object src/CMakeFiles/hdf5-static.dir/H5Pint.c.o
[ 67%] Building C object src/CMakeFiles/hdf5-static.dir/H5Plapl.c.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Plapl.c:35:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Plapl.c: In function ‘H5Pget_elink_prefix’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1476:31: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation]
1476 | #define HDstrncpy(X,Y,Z) strncpy(X,Y,Z)
| ^~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Plapl.c:1062:13: note: in expansion of macro ‘HDstrncpy’
1062 | HDstrncpy(prefix, my_prefix, MIN(len + 1, size));
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1467:28: note: length computed here
1467 | #define HDstrlen(S) strlen(S)
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Plapl.c:1060:15: note: in expansion of macro ‘HDstrlen’
1060 | len = HDstrlen(my_prefix);
| ^~~~~~~~
[ 68%] Building C object src/CMakeFiles/hdf5-static.dir/H5Plcpl.c.o
[ 68%] Building C object src/CMakeFiles/hdf5-static.dir/H5Pocpl.c.o
[ 68%] Building C object src/CMakeFiles/hdf5-static.dir/H5Pocpypl.c.o
[ 69%] Building C object src/CMakeFiles/hdf5-static.dir/H5Pstrcpl.c.o
[ 69%] Building C object src/CMakeFiles/hdf5-static.dir/H5Ptest.c.o
[ 69%] Building C object src/CMakeFiles/hdf5-static.dir/H5PB.c.o
[ 69%] Building C object src/CMakeFiles/hdf5-static.dir/H5PL.c.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5PL.c:23:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5PL.c: In function ‘H5PLget’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1476:31: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation]
1476 | #define HDstrncpy(X,Y,Z) strncpy(X,Y,Z)
| ^~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5PL.c:373:9: note: in expansion of macro ‘HDstrncpy’
373 | HDstrncpy(path_buf, path, MIN((size_t)(path_len + 1), buf_size));
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1467:28: note: length computed here
1467 | #define HDstrlen(S) strlen(S)
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5PL.c:369:16: note: in expansion of macro ‘HDstrlen’
369 | path_len = HDstrlen(path);
| ^~~~~~~~
[ 70%] Building C object src/CMakeFiles/hdf5-static.dir/H5PLint.c.o
[ 70%] Building C object src/CMakeFiles/hdf5-static.dir/H5PLpath.c.o
[ 70%] Building C object src/CMakeFiles/hdf5-static.dir/H5PLplugin_cache.c.o
[ 70%] Building C object src/CMakeFiles/hdf5-static.dir/H5R.c.o
[ 71%] Building C object src/CMakeFiles/hdf5-static.dir/H5Rdeprec.c.o
[ 71%] Building C object src/CMakeFiles/hdf5-static.dir/H5Rint.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Rint.c: In function ‘H5R__get_name’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Rint.c:709:31: warning: unused parameter ‘id’ [-Wunused-parameter]
709 | H5R__get_name(H5F_t *f, hid_t id, H5R_type_t ref_type, const void *_ref,
| ~~~~~~^~
[ 71%] Building C object src/CMakeFiles/hdf5-static.dir/H5UC.c.o
[ 72%] Building C object src/CMakeFiles/hdf5-static.dir/H5RS.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5RS.c: In function ‘H5RS_wrap’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5RS.c:151:20: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
151 | ret_value->s = (char *)s;
| ^
[ 72%] Building C object src/CMakeFiles/hdf5-static.dir/H5S.c.o
[ 72%] Building C object src/CMakeFiles/hdf5-static.dir/H5Sall.c.o
[ 72%] Building C object src/CMakeFiles/hdf5-static.dir/H5Sdbg.c.o
[ 73%] Building C object src/CMakeFiles/hdf5-static.dir/H5Shyper.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Shyper.c: In function ‘H5S__hyper_iter_init’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Shyper.c:602:28: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
602 | H5S__hyper_rebuild((H5S_t *)space); /* Casting away const OK -NAF */
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Shyper.c: In function ‘H5S__hyper_is_regular’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Shyper.c:5181:28: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
5181 | H5S__hyper_rebuild((H5S_t *)space); /* Casting away const OK -NAF */
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Shyper.c: In function ‘H5S__hyper_shape_same’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Shyper.c:5447:28: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
5447 | H5S__hyper_rebuild((H5S_t *)space1); /* Casting away const OK -QAK */
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Shyper.c:5449:28: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
5449 | H5S__hyper_rebuild((H5S_t *)space2); /* Casting away const OK -QAK */
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Shyper.c:5494:42: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
5494 | if(H5S__hyper_generate_spans((H5S_t *)space1) < 0) /* Casting away const OK -QAK */
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Shyper.c:5497:42: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
5497 | if(H5S__hyper_generate_spans((H5S_t *)space2) < 0) /* Casting away const OK -QAK */
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Shyper.c: In function ‘H5S__hyper_intersect_block’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Shyper.c:6118:28: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
6118 | H5S__hyper_rebuild((H5S_t *)space); /* Casting away const OK -QAK */
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Shyper.c: In function ‘H5S__hyper_proj_int_iterate’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Shyper.c:11249:74: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
11249 | H5S_HYPER_PROJ_INT_ADD_SKIP(udata, H5S__hyper_spans_nelem_helper((H5S_hyper_span_info_t *)ss_span_info, 0, udata->op_gen) * count, FAIL); /* Casting away const OK -NAF */
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Shyper.c:74:27: note: in definition of macro ‘H5S_HYPER_PROJ_INT_ADD_SKIP’
74 | (UDATA)->skip += (ADD); \
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Shyper.c: In function ‘H5S__hyper_project_intersection’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Shyper.c:11338:42: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
11338 | if(H5S__hyper_generate_spans((H5S_t *)src_space) < 0) /* Casting away const OK -NAF */
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Shyper.c:11358:42: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
11358 | if(H5S__hyper_generate_spans((H5S_t *)dst_space) < 0) /* Casting away const OK -NAF */
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Shyper.c:11376:38: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
11376 | if(H5S__hyper_generate_spans((H5S_t *)src_intersect_space) < 0) /* Casting away const OK -NAF */
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Shyper.c: At top level:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Shyper.c:3531:1: warning: ‘H5S__hyper_get_enc_size_real’ defined but not used [-Wunused-function]
3531 | H5S__hyper_get_enc_size_real(hsize_t max_size)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 73%] Building C object src/CMakeFiles/hdf5-static.dir/H5Smpio.c.o
[ 73%] Building C object src/CMakeFiles/hdf5-static.dir/H5Snone.c.o
[ 74%] Building C object src/CMakeFiles/hdf5-static.dir/H5Spoint.c.o
[ 74%] Building C object src/CMakeFiles/hdf5-static.dir/H5Sselect.c.o
[ 74%] Building C object src/CMakeFiles/hdf5-static.dir/H5Stest.c.o
[ 74%] Building C object src/CMakeFiles/hdf5-static.dir/H5SL.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5SL.c: In function ‘H5SL_release_common’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5SL.c:896:36: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
896 | (void)(op)(node->item, (void *)node->key, op_data);
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5SL.c: In function ‘H5SL_iterate’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5SL.c:2210:46: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
2210 | if((ret_value = (op)(node->item, (void *)node->key, op_data)) != 0)
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5SL.c: In function ‘H5SL_try_free_safe’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5SL.c:2369:44: warning: cast discards ‘const’ qualifier from pointer target type [-Wcast-qual]
2369 | if((op_ret = (op)(node->item , (void *)node->key, op_data)) < 0)
| ^
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5SL.c:64:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5SL.c: In function ‘H5SL_insert_common’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:2437:11: warning: ‘ret_value’ may be used uninitialized [-Wmaybe-uninitialized]
2437 | return(ret_value); \
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5SL.c:846:5: note: in expansion of macro ‘FUNC_LEAVE_NOAPI’
846 | FUNC_LEAVE_NOAPI(ret_value)
| ^~~~~~~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5SL.c:760:18: note: ‘ret_value’ was declared here
760 | H5SL_node_t *ret_value; /* Return value */
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5SL.c: In function ‘H5SL_search’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:2437:11: warning: ‘ret_value’ may be used uninitialized [-Wmaybe-uninitialized]
2437 | return(ret_value); \
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5SL.c:1459:5: note: in expansion of macro ‘FUNC_LEAVE_NOAPI’
1459 | FUNC_LEAVE_NOAPI(ret_value)
| ^~~~~~~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5SL.c:1397:11: note: ‘ret_value’ was declared here
1397 | void *ret_value; /* Return value */
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5SL.c: In function ‘H5SL_find’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:2437:11: warning: ‘ret_value’ may be used uninitialized [-Wmaybe-uninitialized]
2437 | return(ret_value); \
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5SL.c:1760:5: note: in expansion of macro ‘FUNC_LEAVE_NOAPI’
1760 | FUNC_LEAVE_NOAPI(ret_value)
| ^~~~~~~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5SL.c:1698:18: note: ‘ret_value’ was declared here
1698 | H5SL_node_t *ret_value; /* Return value */
| ^~~~~~~~~
[ 75%] Building C object src/CMakeFiles/hdf5-static.dir/H5SM.c.o
[ 75%] Building C object src/CMakeFiles/hdf5-static.dir/H5SMbtree2.c.o
[ 75%] Building C object src/CMakeFiles/hdf5-static.dir/H5SMcache.c.o
[ 75%] Building C object src/CMakeFiles/hdf5-static.dir/H5SMmessage.c.o
[ 76%] Building C object src/CMakeFiles/hdf5-static.dir/H5SMtest.c.o
[ 76%] Building C object src/CMakeFiles/hdf5-static.dir/H5ST.c.o
[ 76%] Building C object src/CMakeFiles/hdf5-static.dir/H5T.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5T.c: In function ‘H5T_nameof’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5T.c:5246:23: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
5246 | ret_value = &(dt->path);
| ^
[ 77%] Building C object src/CMakeFiles/hdf5-static.dir/H5Tarray.c.o
[ 77%] Building C object src/CMakeFiles/hdf5-static.dir/H5Tbit.c.o
[ 77%] Building C object src/CMakeFiles/hdf5-static.dir/H5Tcommit.c.o
[ 77%] Building C object src/CMakeFiles/hdf5-static.dir/H5Tcompound.c.o
[ 78%] Building C object src/CMakeFiles/hdf5-static.dir/H5Tconv.c.o
[ 78%] Building C object src/CMakeFiles/hdf5-static.dir/H5Tcset.c.o
[ 78%] Building C object src/CMakeFiles/hdf5-static.dir/H5Tdbg.c.o
[ 79%] Building C object src/CMakeFiles/hdf5-static.dir/H5Tdeprec.c.o
[ 79%] Building C object src/CMakeFiles/hdf5-static.dir/H5Tenum.c.o
[ 79%] Building C object src/CMakeFiles/hdf5-static.dir/H5Tfields.c.o
[ 79%] Building C object src/CMakeFiles/hdf5-static.dir/H5Tfixed.c.o
[ 80%] Building C object src/CMakeFiles/hdf5-static.dir/H5Tfloat.c.o
[ 80%] Building C object src/CMakeFiles/hdf5-static.dir/H5Tnative.c.o
[ 80%] Building C object src/CMakeFiles/hdf5-static.dir/H5Toffset.c.o
[ 80%] Building C object src/CMakeFiles/hdf5-static.dir/H5Toh.c.o
[ 81%] Building C object src/CMakeFiles/hdf5-static.dir/H5Topaque.c.o
[ 81%] Building C object src/CMakeFiles/hdf5-static.dir/H5Torder.c.o
[ 81%] Building C object src/CMakeFiles/hdf5-static.dir/H5Tpad.c.o
[ 82%] Building C object src/CMakeFiles/hdf5-static.dir/H5Tprecis.c.o
[ 82%] Building C object src/CMakeFiles/hdf5-static.dir/H5Tstrpad.c.o
[ 82%] Building C object src/CMakeFiles/hdf5-static.dir/H5Tvisit.c.o
[ 82%] Building C object src/CMakeFiles/hdf5-static.dir/H5Tvlen.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Tvlen.c: In function ‘H5T_vlen_disk_isnull’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Tvlen.c:852:24: warning: to be safe all intermediate pointers in cast from ‘uint8_t **’ {aka ‘unsigned char **’} to ‘const uint8_t **’ {aka ‘const unsigned char **’} must be ‘const’ qualified [-Wcast-qual]
852 | H5F_addr_decode(f, (const uint8_t **)&vl, &addr);
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Tvlen.c: In function ‘H5T_vlen_disk_read’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Tvlen.c:888:24: warning: to be safe all intermediate pointers in cast from ‘uint8_t **’ {aka ‘unsigned char **’} to ‘const uint8_t **’ {aka ‘const unsigned char **’} must be ‘const’ qualified [-Wcast-qual]
888 | H5F_addr_decode(f, (const uint8_t **)&vl, &(hobjid.addr));
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Tvlen.c: In function ‘H5T_vlen_disk_write’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Tvlen.c:939:28: warning: to be safe all intermediate pointers in cast from ‘uint8_t **’ {aka ‘unsigned char **’} to ‘const uint8_t **’ {aka ‘const unsigned char **’} must be ‘const’ qualified [-Wcast-qual]
939 | H5F_addr_decode(f, (const uint8_t **)&bg, &(bg_hobjid.addr));
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Tvlen.c: In function ‘H5T_vlen_disk_setnull’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Tvlen.c:1000:28: warning: to be safe all intermediate pointers in cast from ‘uint8_t **’ {aka ‘unsigned char **’} to ‘const uint8_t **’ {aka ‘const unsigned char **’} must be ‘const’ qualified [-Wcast-qual]
1000 | H5F_addr_decode(f, (const uint8_t **)&bg, &(bg_hobjid.addr));
| ^
[ 83%] Building C object src/CMakeFiles/hdf5-static.dir/H5TS.c.o
[ 83%] Building C object src/CMakeFiles/hdf5-static.dir/H5VM.c.o
[ 83%] Building C object src/CMakeFiles/hdf5-static.dir/H5WB.c.o
[ 84%] Building C object src/CMakeFiles/hdf5-static.dir/H5Z.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Z.c: In function ‘H5Z__init_package’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Z.c:108:33: warning: conversion to ‘unsigned int’ from ‘int’ may change the sign of the result [-Wsign-conversion]
108 | H5Z_SZIP->encoder_present = SZ_encoder_enabled();
| ^~~~~~~~~~~~~~~~~~
[ 84%] Building C object src/CMakeFiles/hdf5-static.dir/H5Zdeflate.c.o
[ 84%] Building C object src/CMakeFiles/hdf5-static.dir/H5Zfletcher32.c.o
[ 84%] Building C object src/CMakeFiles/hdf5-static.dir/H5Znbit.c.o
[ 85%] Building C object src/CMakeFiles/hdf5-static.dir/H5Zscaleoffset.c.o
[ 85%] Building C object src/CMakeFiles/hdf5-static.dir/H5Zshuffle.c.o
[ 85%] Building C object src/CMakeFiles/hdf5-static.dir/H5Zszip.c.o
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Zszip.c: In function ‘H5Z__can_apply_szip’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Zszip.c:90:22: warning: conversion from ‘size_t’ {aka ‘long unsigned int’} to ‘unsigned int’ may change value [-Wconversion]
90 | if((dtype_size = (8 * H5T_get_size(type))) == 0)
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Zszip.c: In function ‘H5Z__set_local_szip’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Zszip.c:165:24: warning: conversion to ‘size_t’ {aka ‘long unsigned int’} from ‘int’ may change the sign of the result [-Wsign-conversion]
165 | dtype_offset = H5T_get_offset(type);
| ^~~~~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Zszip.c:177:36: warning: conversion from ‘size_t’ {aka ‘long unsigned int’} to ‘unsigned int’ may change value [-Wconversion]
177 | cd_values[H5Z_SZIP_PARM_BPP] = dtype_precision;
| ^~~~~~~~~~~~~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Zszip.c:17:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:408:21: warning: conversion to ‘hsize_t’ {aka ‘long long unsigned int’} from ‘hssize_t’ {aka ‘long long int’} may change the sign of the result [-Wsign-conversion]
408 | #define MIN(a,b) (((a)<(b)) ? (a) : (b))
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Zszip.c:206:20: note: in expansion of macro ‘MIN’
206 | scanline = MIN((cd_values[H5Z_SZIP_PARM_PPB] * SZ_MAX_BLOCKS_PER_SCANLINE), npoints);
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Zszip.c:224:35: warning: unsigned conversion from ‘int’ to ‘unsigned int’ changes value from ‘-25’ to ‘4294967271’ [-Wsign-conversion]
224 | cd_values[H5Z_SZIP_PARM_MASK] &= ~(SZ_LSB_OPTION_MASK|SZ_MSB_OPTION_MASK);
| ^~
[ 85%] Building C object src/CMakeFiles/hdf5-static.dir/H5Ztrans.c.o
[ 86%] Building C object src/CMakeFiles/hdf5-static.dir/__/H5Tinit.c.o
[ 86%] Building C object src/CMakeFiles/hdf5-static.dir/__/H5lib_settings.c.o
[ 86%] Linking C static library ../bin/libhdf5.a
[ 87%] Built target hdf5-static
[ 87%] Building C object hl/src/CMakeFiles/hdf5_hl-static.dir/H5DO.c.o
[ 88%] Building C object hl/src/CMakeFiles/hdf5_hl-static.dir/H5DS.c.o
[ 88%] Building C object hl/src/CMakeFiles/hdf5_hl-static.dir/H5IM.c.o
[ 88%] Building C object hl/src/CMakeFiles/hdf5_hl-static.dir/H5LT.c.o
[ 89%] Building C object hl/src/CMakeFiles/hdf5_hl-static.dir/H5LTanalyze.c.o
[ 89%] Building C object hl/src/CMakeFiles/hdf5_hl-static.dir/H5LTparse.c.o
[ 89%] Building C object hl/src/CMakeFiles/hdf5_hl-static.dir/H5PT.c.o
[ 89%] Building C object hl/src/CMakeFiles/hdf5_hl-static.dir/H5TB.c.o
[ 90%] Building C object hl/src/CMakeFiles/hdf5_hl-static.dir/H5LD.c.o
[ 90%] Linking C static library ../../bin/libhdf5_hl.a
[ 90%] Built target hdf5_hl-static
[ 91%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5AbstractDs.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:22,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5AbstractDs.cpp:16:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
[ 91%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5ArrayType.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:22,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5ArrayType.cpp:16:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
[ 91%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5AtomType.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:22,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5AtomType.cpp:16:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
[ 91%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5Attribute.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Attribute.cpp:21:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:851:29: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
851 | #define HDfcntl(F,C,...) fcntl(F,C,__VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1221:22: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1221 | #define HDopen(F,...) open(F,__VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1248:22: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1248 | #define HDprintf(...) HDfprintf(stdout, __VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1437:28: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1437 | #define HDsscanf(S,FMT,...) sscanf(S,FMT,__VA_ARGS__)
| ^~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:27:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Attribute.cpp:22:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
[ 92%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5CommonFG.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5CommonFG.cpp:16:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:851:29: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
851 | #define HDfcntl(F,C,...) fcntl(F,C,__VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1221:22: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1221 | #define HDopen(F,...) open(F,__VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1248:22: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1248 | #define HDprintf(...) HDfprintf(stdout, __VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1437:28: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1437 | #define HDsscanf(S,FMT,...) sscanf(S,FMT,__VA_ARGS__)
| ^~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:27:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5CommonFG.cpp:17:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:34:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5CommonFG.cpp: In member function ‘H5::DataType H5::CommonFG::openDataType(const char*) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5CommonFG.cpp:62:48: note: in expansion of macro ‘H5P_DEFAULT’
62 | hid_t type_id = H5Topen2(getLocId(), name, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5CommonFG.cpp: In member function ‘H5::ArrayType H5::CommonFG::openArrayType(const char*) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5CommonFG.cpp:98:48: note: in expansion of macro ‘H5P_DEFAULT’
98 | hid_t type_id = H5Topen2(getLocId(), name, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5CommonFG.cpp: In member function ‘H5::CompType H5::CommonFG::openCompType(const char*) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5CommonFG.cpp:134:48: note: in expansion of macro ‘H5P_DEFAULT’
134 | hid_t type_id = H5Topen2(getLocId(), name, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5CommonFG.cpp: In member function ‘H5::EnumType H5::CommonFG::openEnumType(const char*) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5CommonFG.cpp:170:48: note: in expansion of macro ‘H5P_DEFAULT’
170 | hid_t type_id = H5Topen2(getLocId(), name, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5CommonFG.cpp: In member function ‘H5::IntType H5::CommonFG::openIntType(const char*) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5CommonFG.cpp:206:48: note: in expansion of macro ‘H5P_DEFAULT’
206 | hid_t type_id = H5Topen2(getLocId(), name, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5CommonFG.cpp: In member function ‘H5::FloatType H5::CommonFG::openFloatType(const char*) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5CommonFG.cpp:242:48: note: in expansion of macro ‘H5P_DEFAULT’
242 | hid_t type_id = H5Topen2(getLocId(), name, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5CommonFG.cpp: In member function ‘H5::StrType H5::CommonFG::openStrType(const char*) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5CommonFG.cpp:278:48: note: in expansion of macro ‘H5P_DEFAULT’
278 | hid_t type_id = H5Topen2(getLocId(), name, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5CommonFG.cpp: In member function ‘H5::VarLenType H5::CommonFG::openVarLenType(const char*) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5CommonFG.cpp:314:48: note: in expansion of macro ‘H5P_DEFAULT’
314 | hid_t type_id = H5Topen2(getLocId(), name, H5P_DEFAULT);
| ^~~~~~~~~~~
[ 92%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5CompType.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:22,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5CompType.cpp:16:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
[ 92%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5DataSet.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataSet.cpp:21:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:851:29: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
851 | #define HDfcntl(F,C,...) fcntl(F,C,__VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1221:22: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1221 | #define HDopen(F,...) open(F,__VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1248:22: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1248 | #define HDprintf(...) HDfprintf(stdout, __VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1437:28: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1437 | #define HDsscanf(S,FMT,...) sscanf(S,FMT,__VA_ARGS__)
| ^~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:27:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataSet.cpp:22:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataSet.cpp: In member function ‘haddr_t H5::DataSet::getOffset() const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:208:56: warning: use of old-style cast to ‘long int’ [-Wold-style-cast]
208 | # define HADDR_UNDEF ((haddr_t)(long)(-1))
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataSet.cpp:288:20: note: in expansion of macro ‘HADDR_UNDEF’
288 | if (ds_addr == HADDR_UNDEF)
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:208:56: warning: use of old-style cast to ‘haddr_t’ {aka ‘long unsigned int’} [-Wold-style-cast]
208 | # define HADDR_UNDEF ((haddr_t)(long)(-1))
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataSet.cpp:288:20: note: in expansion of macro ‘HADDR_UNDEF’
288 | if (ds_addr == HADDR_UNDEF)
| ^~~~~~~~~~~
[ 93%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5DataSpace.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:22,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataSpace.cpp:21:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:37:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataSpace.cpp: In static member function ‘static H5::DataSpace* H5::DataSpace::getConstant()’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Spublic.h:25:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
25 | #define H5S_ALL (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataSpace.cpp:61:30: note: in expansion of macro ‘H5S_ALL’
61 | ALL_ = new DataSpace(H5S_ALL);
| ^~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataSpace.cpp: In constructor ‘H5::DataSpace::DataSpace(H5S_class_t)’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataSpace.cpp:94:1: warning: ‘H5::DataSpace::id’ should be initialized in the member initialization list [-Weffc++]
94 | DataSpace::DataSpace(H5S_class_t type) : IdComponent()
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataSpace.cpp: In constructor ‘H5::DataSpace::DataSpace(int, const hsize_t*, const hsize_t*)’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataSpace.cpp:112:1: warning: ‘H5::DataSpace::id’ should be initialized in the member initialization list [-Weffc++]
112 | DataSpace::DataSpace(int rank, const hsize_t * dims, const hsize_t * maxdims) : IdComponent()
| ^~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataSpace.cpp: In member function ‘void H5::DataSpace::copy(const H5::DataSpace&)’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Spublic.h:25:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
25 | #define H5S_ALL (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataSpace.cpp:160:15: note: in expansion of macro ‘H5S_ALL’
160 | if (id != H5S_ALL) {
| ^~~~~~~
[ 93%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5DataType.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataType.cpp:39:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:851:29: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
851 | #define HDfcntl(F,C,...) fcntl(F,C,__VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1221:22: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1221 | #define HDopen(F,...) open(F,__VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1248:22: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1248 | #define HDprintf(...) HDfprintf(stdout, __VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1437:28: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1437 | #define HDsscanf(S,FMT,...) sscanf(S,FMT,__VA_ARGS__)
| ^~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:22,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataType.cpp:21:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataType.cpp: In constructor ‘H5::DataType::DataType(H5T_class_t, size_t)’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataType.cpp:81:1: warning: ‘H5::DataType::id’ should be initialized in the member initialization list [-Weffc++]
81 | DataType::DataType(const H5T_class_t type_class, size_t size) : H5Object(), encoded_buf(NULL), buf_size(0)
| ^~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataType.cpp: In constructor ‘H5::DataType::DataType(const H5::H5Location&, const void*, H5R_type_t, const H5::PropList&)’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataType.cpp:102:1: warning: ‘H5::DataType::id’ should be initialized in the member initialization list [-Weffc++]
102 | DataType::DataType(const H5Location& loc, const void* ref, H5R_type_t ref_type, const PropList& plist) : H5Object(), encoded_buf(NULL), buf_size(0)
| ^~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataType.cpp: In constructor ‘H5::DataType::DataType(const H5::PredType&)’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataType.cpp:150:1: warning: ‘H5::DataType::id’ should be initialized in the member initialization list [-Weffc++]
150 | DataType::DataType(const PredType& pred_type) : H5Object(), encoded_buf(NULL), buf_size(0)
| ^~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataType.cpp: In constructor ‘H5::DataType::DataType(const H5::H5Location&, const char*)’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataType.cpp:172:1: warning: ‘H5::DataType::id’ should be initialized in the member initialization list [-Weffc++]
172 | DataType::DataType(const H5Location& loc, const char *dtype_name) : H5Object(), encoded_buf(NULL), buf_size(0)
| ^~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataType.cpp: In constructor ‘H5::DataType::DataType(const H5::H5Location&, const std::string&)’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataType.cpp:191:1: warning: ‘H5::DataType::id’ should be initialized in the member initialization list [-Weffc++]
191 | DataType::DataType(const H5Location& loc, const H5std_string& dtype_name) : H5Object(), encoded_buf(NULL), buf_size(0)
| ^~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataType.cpp: In member function ‘void H5::DataType::encode()’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataType.cpp:321:57: warning: use of old-style cast to ‘size_t’ {aka ‘long unsigned int’} [-Wold-style-cast]
321 | encoded_buf = (unsigned char *)HDcalloc((size_t)1, buf_size);
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:734:37: note: in definition of macro ‘HDcalloc’
734 | #define HDcalloc(N,Z) calloc(N,Z)
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:734:40: warning: use of old-style cast to ‘unsigned char*’ [-Wold-style-cast]
734 | #define HDcalloc(N,Z) calloc(N,Z)
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataType.cpp:321:40: note: in expansion of macro ‘HDcalloc’
321 | encoded_buf = (unsigned char *)HDcalloc((size_t)1, buf_size);
| ^~~~~~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:34:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataType.cpp: In member function ‘void H5::DataType::p_commit(hid_t, const char*)’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataType.cpp:433:53: note: in expansion of macro ‘H5P_DEFAULT’
433 | herr_t ret_value = H5Tcommit2(loc_id, name, id, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataType.cpp:433:66: note: in expansion of macro ‘H5P_DEFAULT’
433 | herr_t ret_value = H5Tcommit2(loc_id, name, id, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataType.cpp:433:79: note: in expansion of macro ‘H5P_DEFAULT’
433 | herr_t ret_value = H5Tcommit2(loc_id, name, id, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataType.cpp: In member function ‘hid_t H5::DataType::p_opentype(const H5::H5Location&, const char*) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DataType.cpp:918:57: note: in expansion of macro ‘H5P_DEFAULT’
918 | hid_t ret_value = H5Topen2(loc.getId(), dtype_name, H5P_DEFAULT);
| ^~~~~~~~~~~
[ 93%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5DaccProp.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:22,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DaccProp.cpp:16:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
[ 93%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5DcreatProp.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:22,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DcreatProp.cpp:16:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
[ 94%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5DxferProp.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DxferProp.cpp:16:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:851:29: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
851 | #define HDfcntl(F,C,...) fcntl(F,C,__VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1221:22: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1221 | #define HDopen(F,...) open(F,__VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1248:22: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1248 | #define HDprintf(...) HDfprintf(stdout, __VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1437:28: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1437 | #define HDsscanf(S,FMT,...) sscanf(S,FMT,__VA_ARGS__)
| ^~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:27:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DxferProp.cpp:17:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DxferProp.cpp: In member function ‘void H5::DSetMemXferPropList::setPreserve(bool) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DxferProp.cpp:170:54: warning: use of old-style cast to ‘hbool_t’ {aka ‘bool’} [-Wold-style-cast]
170 | herr_t ret_value = H5Pset_preserve(id, (hbool_t) status);
| ^~~~~~
| ----------------
| static_cast<hbool_t> ( status)
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DxferProp.cpp: In member function ‘std::string H5::DSetMemXferPropList::getDataTransform() const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5DxferProp.cpp:313:63: warning: use of old-style cast to ‘size_t’ {aka ‘long unsigned int’} [-Wold-style-cast]
313 | ssize_t exp_len = H5Pget_data_transform(id, NULL, (size_t)0);
| ^
| ---------
| static_cast<size_t> (0)
[ 94%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5EnumType.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5EnumType.cpp:16:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:851:29: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
851 | #define HDfcntl(F,C,...) fcntl(F,C,__VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1221:22: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1221 | #define HDopen(F,...) open(F,__VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1248:22: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1248 | #define HDprintf(...) HDfprintf(stdout, __VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1437:28: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1437 | #define HDsscanf(S,FMT,...) sscanf(S,FMT,__VA_ARGS__)
| ^~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:27:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5EnumType.cpp:17:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
[ 94%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5Exception.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:22,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.cpp:16:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.cpp: In static member function ‘static void H5::Exception::setAutoPrint(herr_t (*&)(hid_t, void*), void*)’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.cpp:146:37: note: in expansion of macro ‘H5E_DEFAULT’
146 | herr_t ret_value = H5Eset_auto2(H5E_DEFAULT, func, client_data);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.cpp: In static member function ‘static void H5::Exception::dontPrint()’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.cpp:160:37: note: in expansion of macro ‘H5E_DEFAULT’
160 | herr_t ret_value = H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.cpp: In static member function ‘static void H5::Exception::getAutoPrint(herr_t (*&)(hid_t, void*), void**)’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.cpp:179:37: note: in expansion of macro ‘H5E_DEFAULT’
179 | herr_t ret_value = H5Eget_auto2(H5E_DEFAULT, &func, client_data);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.cpp: In static member function ‘static void H5::Exception::clearErrorStack()’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.cpp:195:34: note: in expansion of macro ‘H5E_DEFAULT’
195 | herr_t ret_value = H5Eclear2(H5E_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.cpp: In static member function ‘static void H5::Exception::walkErrorStack(H5E_direction_t, H5E_walk2_t, void*)’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.cpp:244:33: note: in expansion of macro ‘H5E_DEFAULT’
244 | herr_t ret_value = H5Ewalk2(H5E_DEFAULT, direction, func, client_data);
| ^~~~~~~~~~~
[ 94%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5FaccProp.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:22,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5FaccProp.cpp:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
[ 95%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5FcreatProp.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:22,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5FcreatProp.cpp:16:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
[ 95%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5File.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:22,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5File.cpp:21:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5File.cpp: In constructor ‘H5::H5File::H5File(hid_t)’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5File.cpp:164:1: warning: ‘H5::H5File::id’ should be initialized in the member initialization list [-Weffc++]
164 | H5File::H5File(hid_t existing_id) : Group()
| ^~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5File.cpp: In copy constructor ‘H5::H5File::H5File(const H5::H5File&)’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5File.cpp:179:1: warning: ‘H5::H5File::id’ should be initialized in the member initialization list [-Weffc++]
179 | H5File::H5File(const H5File& original) : Group()
| ^~~~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:34:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5File.cpp: In member function ‘void H5::H5File::getVFDHandle(void**) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5File.cpp:513:46: note: in expansion of macro ‘H5P_DEFAULT’
513 | herr_t ret_value = H5Fget_vfd_handle(id, H5P_DEFAULT, file_handle);
| ^~~~~~~~~~~
[ 95%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5FloatType.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:22,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5FloatType.cpp:16:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
[ 96%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5Group.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:22,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Group.cpp:21:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
[ 96%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5IdComponent.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5IdComponent.cpp:16:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:851:29: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
851 | #define HDfcntl(F,C,...) fcntl(F,C,__VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1221:22: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1221 | #define HDopen(F,...) open(F,__VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1248:22: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1248 | #define HDprintf(...) HDfprintf(stdout, __VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1437:28: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1437 | #define HDsscanf(S,FMT,...) sscanf(S,FMT,__VA_ARGS__)
| ^~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:27:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5IdComponent.cpp:17:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
[ 96%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5IntType.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:22,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5IntType.cpp:16:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
[ 96%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5LaccProp.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:22,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5LaccProp.cpp:16:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
[ 97%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5LcreatProp.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:22,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5LcreatProp.cpp:16:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5LcreatProp.cpp: In member function ‘void H5::LinkCreatPropList::setCreateIntermediateGroup(bool) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5LcreatProp.cpp:116:71: warning: use of old-style cast to ‘unsigned int’ [-Wold-style-cast]
116 | herr_t ret_value = H5Pset_create_intermediate_group(id, (unsigned)crt_intmd_group);
| ^~~~~~~~~~~~~~~
| ----------
| static_cast<unsigned> ( )
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5LcreatProp.cpp: In member function ‘bool H5::LinkCreatPropList::getCreateIntermediateGroup() const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5LcreatProp.cpp:142:18: warning: use of old-style cast to ‘bool’ [-Wold-style-cast]
142 | return((bool)crt_intmd_group);
| ^~~~~~~~~~~~~~~
| ------
| static_cast<bool> ( )
[ 97%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5Library.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:22,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Library.cpp:18:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
[ 97%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5Location.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp:18:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:851:29: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
851 | #define HDfcntl(F,C,...) fcntl(F,C,__VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1221:22: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1221 | #define HDopen(F,...) open(F,__VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1248:22: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1248 | #define HDprintf(...) HDfprintf(stdout, __VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1437:28: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1437 | #define HDsscanf(S,FMT,...) sscanf(S,FMT,__VA_ARGS__)
| ^~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:27:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp:19:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:34:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp: In member function ‘void H5::H5Location::setComment(const char*, const char*) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp:214:71: note: in expansion of macro ‘H5P_DEFAULT’
214 | herr_t ret_value = H5Oset_comment_by_name(getId(), name, comment, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp: In member function ‘void H5::H5Location::setComment(const char*) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp:240:70: note: in expansion of macro ‘H5P_DEFAULT’
240 | herr_t ret_value = H5Oset_comment_by_name(getId(), ".", comment, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp: In member function ‘void H5::H5Location::removeComment(const char*) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp:270:68: note: in expansion of macro ‘H5P_DEFAULT’
270 | herr_t ret_value = H5Oset_comment_by_name(getId(), name, NULL, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp: In member function ‘ssize_t H5::H5Location::getComment(const char*, size_t, char*) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp:307:76: note: in expansion of macro ‘H5P_DEFAULT’
307 | comment_len = H5Oget_comment_by_name(getId(), name, comment, buf_size, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp: In member function ‘std::string H5::H5Location::getComment(const char*, size_t) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp:340:79: warning: use of old-style cast to ‘size_t’ {aka ‘long unsigned int’} [-Wold-style-cast]
340 | ssize_t comment_len = H5Oget_comment_by_name(getId(), name, NULL, (size_t)0, H5P_DEFAULT);
| ^
| ---------
| static_cast<size_t> (0)
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp:340:82: note: in expansion of macro ‘H5P_DEFAULT’
340 | ssize_t comment_len = H5Oget_comment_by_name(getId(), name, NULL, (size_t)0, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp: In member function ‘hid_t H5::H5Location::p_dereference(hid_t, const void*, H5R_type_t, const H5::PropList&, const char*)’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp:526:20: note: in expansion of macro ‘H5P_DEFAULT’
526 | plist_id = H5P_DEFAULT;
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp: In member function ‘H5::Group H5::H5Location::createGroup(const char*, const H5::LinkCreatPropList&) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp:775:62: note: in expansion of macro ‘H5P_DEFAULT’
775 | hid_t group_id = H5Gcreate2(getId(), name, lcpl.getId(), H5P_DEFAULT, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp:775:75: note: in expansion of macro ‘H5P_DEFAULT’
775 | hid_t group_id = H5Gcreate2(getId(), name, lcpl.getId(), H5P_DEFAULT, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp: In member function ‘H5::Group H5::H5Location::createGroup(const char*, size_t) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp:836:48: note: in expansion of macro ‘H5P_DEFAULT’
836 | hid_t group_id = H5Gcreate2(getId(), name, H5P_DEFAULT, gcpl_id, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp:836:70: note: in expansion of macro ‘H5P_DEFAULT’
836 | hid_t group_id = H5Gcreate2(getId(), name, H5P_DEFAULT, gcpl_id, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp: In member function ‘H5::Group H5::H5Location::openGroup(const char*) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp:878:46: note: in expansion of macro ‘H5P_DEFAULT’
878 | hid_t group_id = H5Gopen2(getId(), name, H5P_DEFAULT);
| ^~~~~~~~~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Opublic.h:31,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Apublic.h:22,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:23:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp: In member function ‘void H5::H5Location::link(H5L_type_t, const char*, const char*) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Lpublic.h:41:29: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
41 | #define H5L_SAME_LOC (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp:1161:60: note: in expansion of macro ‘H5L_SAME_LOC’
1161 | ret_value = H5Lcreate_hard(getId(), curr_name, H5L_SAME_LOC, new_name, H5P_DEFAULT, H5P_DEFAULT);
| ^~~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp:1161:84: note: in expansion of macro ‘H5P_DEFAULT’
1161 | ret_value = H5Lcreate_hard(getId(), curr_name, H5L_SAME_LOC, new_name, H5P_DEFAULT, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp:1161:97: note: in expansion of macro ‘H5P_DEFAULT’
1161 | ret_value = H5Lcreate_hard(getId(), curr_name, H5L_SAME_LOC, new_name, H5P_DEFAULT, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp:1165:69: note: in expansion of macro ‘H5P_DEFAULT’
1165 | ret_value = H5Lcreate_soft(curr_name,getId(), new_name, H5P_DEFAULT, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp:1165:82: note: in expansion of macro ‘H5P_DEFAULT’
1165 | ret_value = H5Lcreate_soft(curr_name,getId(), new_name, H5P_DEFAULT, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp: In member function ‘void H5::H5Location::copyLink(const char*, const char*, const H5::LinkCreatPropList&, const H5::LinkAccPropList&) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Lpublic.h:41:29: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
41 | #define H5L_SAME_LOC (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp:1250:44: note: in expansion of macro ‘H5L_SAME_LOC’
1250 | ret_value = H5Lcopy(getId(), src_name, H5L_SAME_LOC, dst_name, lcpl_id, lapl_id);
| ^~~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp: In member function ‘void H5::H5Location::moveLink(const char*, const char*, const H5::LinkCreatPropList&, const H5::LinkAccPropList&) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Lpublic.h:41:29: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
41 | #define H5L_SAME_LOC (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp:1330:44: note: in expansion of macro ‘H5L_SAME_LOC’
1330 | ret_value = H5Lmove(getId(), src_name, H5L_SAME_LOC, dst_name, lcpl_id, lapl_id);
| ^~~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp: In member function ‘std::string H5::H5Location::getLinkval(const char*, size_t) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp:1641:59: note: in expansion of macro ‘H5P_DEFAULT’
1641 | ret_value = H5Lget_info(getId(), name, &linkinfo, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp:1654:66: note: in expansion of macro ‘H5P_DEFAULT’
1654 | ret_value = H5Lget_val(getId(), name, value_C, val_size, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp: In member function ‘std::string H5::H5Location::getObjnameByIdx(hsize_t) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp:1850:99: note: in expansion of macro ‘H5P_DEFAULT’
1850 | ssize_t name_len = H5Lget_name_by_idx(getId(), ".", H5_INDEX_NAME, H5_ITER_INC, idx, NULL, 0, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp:1858:102: note: in expansion of macro ‘H5P_DEFAULT’
1858 | name_len = H5Lget_name_by_idx(getId(), ".", H5_INDEX_NAME, H5_ITER_INC, idx, name_C, name_len+1, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp: In member function ‘ssize_t H5::H5Location::getObjnameByIdx(hsize_t, char*, size_t) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp:1891:102: note: in expansion of macro ‘H5P_DEFAULT’
1891 | ssize_t name_len = H5Lget_name_by_idx(getId(), ".", H5_INDEX_NAME, H5_ITER_INC, idx, name, size, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp: In member function ‘H5O_type_t H5::H5Location::childObjType(const char*) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp:1948:89: note: in expansion of macro ‘H5P_DEFAULT’
1948 | herr_t ret_value = H5Oget_info_by_name2(getId(), objname, &objinfo, H5O_INFO_BASIC, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp: In member function ‘H5O_type_t H5::H5Location::childObjType(hsize_t, H5_index_t, H5_iter_order_t, const char*) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp:2023:107: note: in expansion of macro ‘H5P_DEFAULT’
2023 | ret_value = H5Oget_info_by_idx2(getId(), objname, index_type, order, index, &objinfo, H5O_INFO_BASIC, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp: In member function ‘unsigned int H5::H5Location::childObjVersion(const char*) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Location.cpp:2065:87: note: in expansion of macro ‘H5P_DEFAULT’
2065 | herr_t ret_value = H5Oget_info_by_name2(getId(), objname, &objinfo, H5O_INFO_HDR, H5P_DEFAULT);
| ^~~~~~~~~~~
[ 98%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5Object.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Object.cpp:16:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:851:29: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
851 | #define HDfcntl(F,C,...) fcntl(F,C,__VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1221:22: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1221 | #define HDopen(F,...) open(F,__VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1248:22: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1248 | #define HDprintf(...) HDfprintf(stdout, __VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1437:28: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1437 | #define HDsscanf(S,FMT,...) sscanf(S,FMT,__VA_ARGS__)
| ^~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:27:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Object.cpp:17:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Object.cpp: In function ‘herr_t H5::userAttrOpWrpr(hid_t, const char*, const H5A_info_t*, void*)’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Object.cpp:45:40: warning: unused parameter ‘loc_id’ [-Wunused-parameter]
45 | extern "C" herr_t userAttrOpWrpr(hid_t loc_id, const char *attr_name,
| ~~~~~~^~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Object.cpp:46:23: warning: unused parameter ‘ainfo’ [-Wunused-parameter]
46 | const H5A_info_t *ainfo, void *op_data)
| ~~~~~~~~~~~~~~~~~~^~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Object.cpp: In function ‘herr_t H5::userVisitOpWrpr(hid_t, const char*, const H5O_info_t*, void*)’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Object.cpp:56:41: warning: unused parameter ‘obj_id’ [-Wunused-parameter]
56 | extern "C" herr_t userVisitOpWrpr(hid_t obj_id, const char *attr_name,
| ~~~~~~^~~~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:34:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Object.cpp: In member function ‘H5::Attribute H5::H5Object::createAttribute(const char*, const H5::DataType&, const H5::DataSpace&, const H5::PropList&) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Object.cpp:113:76: note: in expansion of macro ‘H5P_DEFAULT’
113 | hid_t attr_id = H5Acreate2(getId(), name, type_id, space_id, plist_id, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Object.cpp: In member function ‘H5::Attribute H5::H5Object::openAttribute(const char*) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Object.cpp:148:44: note: in expansion of macro ‘H5P_DEFAULT’
148 | hid_t attr_id = H5Aopen(getId(), name, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Object.cpp: In member function ‘H5::Attribute H5::H5Object::openAttribute(unsigned int) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Object.cpp:184:55: note: in expansion of macro ‘H5P_DEFAULT’
184 | H5_ITER_INC, static_cast<hsize_t>(idx), H5P_DEFAULT, H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Object.cpp:184:68: note: in expansion of macro ‘H5P_DEFAULT’
184 | H5_ITER_INC, static_cast<hsize_t>(idx), H5P_DEFAULT, H5P_DEFAULT);
| ^~~~~~~~~~~
[ 98%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5OcreatProp.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:22,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5OcreatProp.cpp:16:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
[ 98%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5PredType.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:22,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5PredType.cpp:16:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5PredType.cpp: In member function ‘void H5::PredType::commit(H5::H5Location&, const char*)’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5PredType.cpp:86:35: warning: unused parameter ‘loc’ [-Wunused-parameter]
86 | void PredType::commit(H5Location& loc, const char* name)
| ~~~~~~~~~~~~^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5PredType.cpp:86:52: warning: unused parameter ‘name’ [-Wunused-parameter]
86 | void PredType::commit(H5Location& loc, const char* name)
| ~~~~~~~~~~~~^~~~
[ 98%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5PropList.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5PropList.cpp:22:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:851:29: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
851 | #define HDfcntl(F,C,...) fcntl(F,C,__VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1221:22: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1221 | #define HDopen(F,...) open(F,__VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1248:22: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1248 | #define HDprintf(...) HDfprintf(stdout, __VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1437:28: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1437 | #define HDsscanf(S,FMT,...) sscanf(S,FMT,__VA_ARGS__)
| ^~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:27:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5PropList.cpp:23:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:34:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5PropList.cpp: In static member function ‘static H5::PropList* H5::PropList::getConstant()’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5PropList.cpp:64:33: note: in expansion of macro ‘H5P_DEFAULT’
64 | DEFAULT_ = new PropList(H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5PropList.cpp: In constructor ‘H5::PropList::PropList()’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5PropList.cpp:93:42: note: in expansion of macro ‘H5P_DEFAULT’
93 | PropList::PropList() : IdComponent(), id(H5P_DEFAULT) {}
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5PropList.cpp: In constructor ‘H5::PropList::PropList(hid_t)’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5PropList.cpp:118:1: warning: ‘H5::PropList::id’ should be initialized in the member initialization list [-Weffc++]
118 | PropList::PropList(const hid_t plist_id) : IdComponent()
| ^~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5PropList.cpp:121:14: note: in expansion of macro ‘H5P_DEFAULT’
121 | id = H5P_DEFAULT;
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5PropList.cpp:160:16: note: in expansion of macro ‘H5P_DEFAULT’
160 | id = H5P_DEFAULT;
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5PropList.cpp: In member function ‘void H5::PropList::setProperty(const char*, const char*) const’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5PropList.cpp:628:54: warning: use of old-style cast to ‘const void*’ [-Wold-style-cast]
628 | herr_t ret_value = H5Pset(id, name, (const void*)charptr);
| ^~~~~~~
| -
| static_cast<-
| > ( )
[ 99%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5StrType.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:22,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5StrType.cpp:16:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5StrType.cpp: In constructor ‘H5::StrType::StrType(int, const size_t&)’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5StrType.cpp:105:28: warning: unused parameter ‘dummy’ [-Wunused-parameter]
105 | StrType::StrType(const int dummy, const size_t& size) : AtomType()
| ~~~~~~~~~~^~~~~
[ 99%] Building CXX object c++/src/CMakeFiles/hdf5_cpp-static.dir/H5VarLenType.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:22,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Include.h:15,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5VarLenType.cpp:16:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:26:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Epublic.h:27:40: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
27 | #define H5E_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/c++/src/H5Exception.h:72:55: note: in expansion of macro ‘H5E_DEFAULT’
72 | hid_t err_stack = H5E_DEFAULT);
| ^~~~~~~~~~~
[ 99%] Linking CXX static library ../../bin/libhdf5_cpp.a
[ 99%] Built target hdf5_cpp-static
[ 99%] Building CXX object hl/c++/src/CMakeFiles/hdf5_hl_cpp-static.dir/H5PacketTable.cpp.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/hl/src/H5HLprivate2.h:24,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/hl/c++/src/H5PacketTable.cpp:23:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:851:29: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
851 | #define HDfcntl(F,C,...) fcntl(F,C,__VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1221:22: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1221 | #define HDopen(F,...) open(F,__VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1248:22: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1248 | #define HDprintf(...) HDfprintf(stdout, __VA_ARGS__)
| ^~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5private.h:1437:28: warning: anonymous variadic macros were introduced in C++11 [-Wvariadic-macros]
1437 | #define HDsscanf(S,FMT,...) sscanf(S,FMT,__VA_ARGS__)
| ^~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:22,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/hl/src/H5HLprivate2.h:18:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5public.h:335:19: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
335 | unsigned long long total_alloc_bytes; /* Running count of total # of bytes allocated */
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:46:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5FDlog.h:65:81: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
65 | H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/hl/src/hdf5_hl.h:25,
from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/hl/src/H5HLprivate2.h:21:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/hl/src/H5LTpublic.h:213:43: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
213 | const long long *buffer,
| ^~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/hl/src/H5LTpublic.h:290:37: warning: ISO C++ 1998 does not support ‘long long’ [-Wlong-long]
290 | long long *data );
| ^~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/hl/c++/src/H5PacketTable.cpp:25:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/hl/c++/src/H5PacketTable.h: In constructor ‘PacketTable::PacketTable()’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/hl/c++/src/H5PacketTable.h:37:5: warning: ‘PacketTable::table_id’ should be initialized in the member initialization list [-Weffc++]
37 | PacketTable() {table_id = H5I_BADID;}
| ^~~~~~~~~~~
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/hdf5.h:34:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/hl/c++/src/H5PacketTable.h: At global scope:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/src/H5Ppublic.h:96:32: warning: use of old-style cast to ‘hid_t’ {aka ‘long int’} [-Wold-style-cast]
96 | #define H5P_DEFAULT (hid_t)0
| ^
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/hl/c++/src/H5PacketTable.h:140:106: note: in expansion of macro ‘H5P_DEFAULT’
140 | FL_PacketTable(hid_t fileID, const char* name, hid_t dtypeID, hsize_t chunkSize = 0, hid_t plistID = H5P_DEFAULT);
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/hl/c++/src/H5PacketTable.cpp: In constructor ‘PacketTable::PacketTable(hid_t, const char*)’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/hl/c++/src/H5PacketTable.cpp:35:5: warning: ‘PacketTable::table_id’ should be initialized in the member initialization list [-Weffc++]
35 | PacketTable::PacketTable(hid_t fileID, const char* name)
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/hl/c++/src/H5PacketTable.cpp: In constructor ‘PacketTable::PacketTable(hid_t, char*)’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/hl/c++/src/H5PacketTable.cpp:41:5: warning: ‘PacketTable::table_id’ should be initialized in the member initialization list [-Weffc++]
41 | PacketTable::PacketTable(hid_t fileID, char* name)
| ^~~~~~~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/hl/c++/src/H5PacketTable.cpp: In member function ‘int FL_PacketTable::GetPackets(hsize_t, hsize_t, void*)’:
/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/vendor/hdf5/hl/c++/src/H5PacketTable.cpp:255:86: warning: use of old-style cast to ‘size_t’ {aka ‘long unsigned int’} [-Wold-style-cast]
255 | return H5PTread_packets(table_id, startIndex, (size_t)(endIndex-startIndex+1), data);
| ^
| --------
| static_cast<size_t> ( )
[100%] Linking CXX static library ../../../bin/libhdf5_hl_cpp.a
[100%] Built target hdf5_hl_cpp-static
-- Install configuration: "Release"
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/share/cmake/hdf5/hdf5-targets.cmake
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/share/cmake/hdf5/hdf5-targets-release.cmake
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/share/cmake/hdf5/hdf5-config.cmake
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/share/cmake/hdf5/hdf5-config-version.cmake
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/lib/libhdf5.settings
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/share/COPYING
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/include/hdf5.h
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/include/H5api_adpt.h
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/include/H5public.h
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/include/H5Apublic.h
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/include/H5ACpublic.h
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-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/include/H5Dpublic.h
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/include/H5Epubgen.h
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/include/H5Epublic.h
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/include/H5Fpublic.h
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/include/H5FDcore.h
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/include/H5FDdirect.h
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/include/H5FDfamily.h
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/include/H5FDhdfs.h
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-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/include/H5FDpublic.h
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/include/H5FDros3.h
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/include/H5FDs3comms.h
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-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/include/H5FDstdio.h
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/include/H5FDwindows.h
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/include/H5Gpublic.h
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/include/H5Ipublic.h
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-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/include/H5Opublic.h
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-- Up-to-date: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/include/H5Epubgen.h
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-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/lib/libhdf5.a
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/lib/pkgconfig/hdf5-1.10.7.pc
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-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/include/H5DOpublic.h
-- Installing: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib/inst/include/H5DSpublic.h
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[1] TRUE TRUE TRUE
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rhdf5lib)