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This page was generated on 2026-03-12 16:11 -0400 (Thu, 12 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-03-06 r89561) -- "Unsuffered Consequences" 903
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Package 153/230HostnameOS / ArchINSTALLBUILDCHECK
MSnbase 2.37.0  (landing page)
Laurent Gatto
Snapshot Date: 2026-03-12 12:00 -0400 (Thu, 12 Mar 2026)
git_url: https://git.bioconductor.org/packages/MSnbase
git_branch: devel
git_last_commit: 3ca1ea4
git_last_commit_date: 2025-10-29 10:06:57 -0400 (Wed, 29 Oct 2025)
teran2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for MSnbase on teran2

To the developers/maintainers of the MSnbase package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: MSnbase
Version: 2.37.0
Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data MSnbase
StartedAt: 2026-03-12 13:12:32 -0400 (Thu, 12 Mar 2026)
EndedAt: 2026-03-12 13:15:01 -0400 (Thu, 12 Mar 2026)
EllapsedTime: 149.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data MSnbase
###
##############################################################################
##############################################################################


* checking for file ‘MSnbase/DESCRIPTION’ ... OK
* preparing ‘MSnbase’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘v01-MSnbase-demo.Rmd’ using rmarkdown
--- finished re-building ‘v01-MSnbase-demo.Rmd’

--- re-building ‘v02-MSnbase-io.Rmd’ using rmarkdown
--- finished re-building ‘v02-MSnbase-io.Rmd’

--- re-building ‘v03-MSnbase-centroiding.Rmd’ using rmarkdown
--- finished re-building ‘v03-MSnbase-centroiding.Rmd’

--- re-building ‘v04-benchmarking.Rmd’ using rmarkdown

Quitting from v04-benchmarking.Rmd:98-102 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'pryr'
---
Backtrace:
    ▆
 1. └─base::library("pryr")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'v04-benchmarking.Rmd' failed with diagnostics:
there is no package called 'pryr'
--- failed re-building ‘v04-benchmarking.Rmd’

--- re-building ‘v05-MSnbase-development.Rmd’ using rmarkdown
--- finished re-building ‘v05-MSnbase-development.Rmd’

SUMMARY: processing the following file failed:
  ‘v04-benchmarking.Rmd’

Error: Vignette re-building failed.
Execution halted