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This page was generated on 2026-04-10 10:05 -0400 (Fri, 10 Apr 2026).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 alpha (2026-04-04 r89791) 921
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Package 102/231HostnameOS / ArchINSTALLBUILDCHECK
GenomicFeatures 1.63.2  (landing page)
H. Pagès
Snapshot Date: 2026-04-10 06:00 -0400 (Fri, 10 Apr 2026)
git_url: https://git.bioconductor.org/packages/GenomicFeatures
git_branch: devel
git_last_commit: a1a980e
git_last_commit_date: 2026-04-05 15:55:16 -0400 (Sun, 05 Apr 2026)
teran2Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  

INSTALL results for GenomicFeatures on teran2

To the developers/maintainers of the GenomicFeatures package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: GenomicFeatures
Version: 1.63.2
Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD INSTALL GenomicFeatures
StartedAt: 2026-04-10 06:21:38 -0400 (Fri, 10 Apr 2026)
EndedAt: 2026-04-10 06:22:09 -0400 (Fri, 10 Apr 2026)
EllapsedTime: 31.1 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD INSTALL GenomicFeatures
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* installing to library ‘/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library’
* installing *source* package ‘GenomicFeatures’ ...
** this is package ‘GenomicFeatures’ version ‘1.63.2’
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0’
gcc -std=gnu2x -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/S4Vectors/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/IRanges/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security -c IRanges_stubs.c -o IRanges_stubs.o
gcc -std=gnu2x -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/S4Vectors/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/IRanges/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security -c R_init_GenomicFeatures.c -o R_init_GenomicFeatures.o
gcc -std=gnu2x -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/S4Vectors/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/IRanges/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -std=gnu2x -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/S4Vectors/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/IRanges/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security -c transcriptLocs2refLocs.c -o transcriptLocs2refLocs.o
In function ‘tloc2rloc’,
    inlined from ‘C_tlocs2rlocs’ at transcriptLocs2refLocs.c:208:26:
transcriptLocs2refLocs.c:143:45: warning: ‘start’ may be used uninitialized [-Wmaybe-uninitialized]
  143 |         return on_minus_strand ? end - tloc : start + tloc;
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
transcriptLocs2refLocs.c: In function ‘C_tlocs2rlocs’:
transcriptLocs2refLocs.c:120:24: note: ‘start’ was declared here
  120 |         int nexons, j, start, end, width;
      |                        ^~~~~
In function ‘tloc2rloc’,
    inlined from ‘C_tlocs2rlocs’ at transcriptLocs2refLocs.c:208:26:
transcriptLocs2refLocs.c:143:45: warning: ‘end’ may be used uninitialized [-Wmaybe-uninitialized]
  143 |         return on_minus_strand ? end - tloc : start + tloc;
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
transcriptLocs2refLocs.c: In function ‘C_tlocs2rlocs’:
transcriptLocs2refLocs.c:120:31: note: ‘end’ was declared here
  120 |         int nexons, j, start, end, width;
      |                               ^~~
gcc -std=gnu2x -shared -L/usr/local/lib -o GenomicFeatures.so IRanges_stubs.o R_init_GenomicFeatures.o S4Vectors_stubs.o transcriptLocs2refLocs.o
installing to /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/00LOCK-GenomicFeatures/00new/GenomicFeatures/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GenomicFeatures)