Rapid builds (Linux only) of a subset of BioC 3.21<BR>Report updated every 6 hours - BUILD results for DirichletMultinomial on teran2

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	871
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BUILD results for DirichletMultinomial on teran2

To the developers/maintainers of the DirichletMultinomial package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: DirichletMultinomial

Version: 1.49.0

Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data DirichletMultinomial

StartedAt: 2025-04-08 12:15:42 -0400 (Tue, 08 Apr 2025)

EndedAt: 2025-04-08 12:15:46 -0400 (Tue, 08 Apr 2025)

EllapsedTime: 3.5 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data DirichletMultinomial
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* checking for file ‘DirichletMultinomial/DESCRIPTION’ ... OK
* preparing ‘DirichletMultinomial’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘DirichletMultinomial’ ...
** this is package ‘DirichletMultinomial’ version ‘1.49.0’
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG   -I/usr/local/include   `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fpic  -g -O2  -Wall -Werror=format-security -c R_init_DirichletMultinomial.c -o R_init_DirichletMultinomial.o
gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG   -I/usr/local/include   `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fpic  -g -O2  -Wall -Werror=format-security -c dirichlet_fit.c -o dirichlet_fit.o
gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG   -I/usr/local/include   `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fpic  -g -O2  -Wall -Werror=format-security -c dirichlet_fit_main.c -o dirichlet_fit_main.o
dirichlet_fit_main.c: In function ‘hessian’:
dirichlet_fit_main.c:391:34: warning: ‘*’ in boolean context, suggest ‘&&’ instead [-Wint-in-bool-context]
  391 |             adCJK0[j] += adPi[i] * n ? gsl_sf_psi(adAlpha[j] + n) : dPsiAlpha;
      |                          ~~~~~~~~^~~
dirichlet_fit_main.c:393:33: warning: ‘*’ in boolean context, suggest ‘&&’ instead [-Wint-in-bool-context]
  393 |             adCJK[j] += adPi[i] * n ? gsl_sf_psi_1(adAlpha[j] + n): dPsi1Alpha;
      |                         ~~~~~~~~^~~
gcc -shared -L/usr/local/lib -o DirichletMultinomial.so R_init_DirichletMultinomial.o dirichlet_fit.o dirichlet_fit_main.o -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm
installing to /tmp/RtmpZEsj57/Rinst92dd713fd8b9d/00LOCK-DirichletMultinomial/00new/DirichletMultinomial/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
Error : DMN-class.Rd: Sections \title, and \name must exist and be unique in Rd files
ERROR: installing Rd objects failed for package ‘DirichletMultinomial’
* removing ‘/tmp/RtmpZEsj57/Rinst92dd713fd8b9d/DirichletMultinomial’
      -----------------------------------
ERROR: package installation failed