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This page was generated on 2026-01-24 11:35 -0500 (Sat, 24 Jan 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" 4811
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" 4545
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2014/2345HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
singIST 0.99.85  (landing page)
Aitor Moruno-Cuenca
Snapshot Date: 2026-01-23 13:40 -0500 (Fri, 23 Jan 2026)
git_url: https://git.bioconductor.org/packages/singIST
git_branch: devel
git_last_commit: 8d9d6ba
git_last_commit_date: 2026-01-07 04:44:12 -0500 (Wed, 07 Jan 2026)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for singIST on kjohnson3

To the developers/maintainers of the singIST package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/singIST.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: singIST
Version: 0.99.85
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data singIST
StartedAt: 2026-01-23 17:47:39 -0500 (Fri, 23 Jan 2026)
EndedAt: 2026-01-23 17:56:44 -0500 (Fri, 23 Jan 2026)
EllapsedTime: 544.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data singIST
###
##############################################################################
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* checking for file ‘singIST/DESCRIPTION’ ... OK
* preparing ‘singIST’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘singISTvignette.Rmd’ using rmarkdown

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Quitting from singISTvignette.Rmd:478-482 [unnamed-chunk-18]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Your query has been redirected to https://status.ensembl.org indicating this Ensembl service is currently unavailable.
Look at ?useEnsembl for details on how to try a mirror site.
---
Backtrace:
    ▆
 1. └─singIST::multiple_singISTrecapitulations(oxa_org, superpathways_fit)
 2.   └─singIST::singISTrecapitulations(...)
 3.     └─singIST::biological_link_function(object, model_object, ...)
 4.       └─singIST::orthology_mapping(...)
 5.         └─biomaRt::useMart(...)
 6.           └─biomaRt:::.useMart(...)
 7.             └─biomaRt:::.listMarts(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'singISTvignette.Rmd' failed with diagnostics:
Your query has been redirected to https://status.ensembl.org indicating this Ensembl service is currently unavailable.
Look at ?useEnsembl for details on how to try a mirror site.
--- failed re-building ‘singISTvignette.Rmd’

SUMMARY: processing the following file failed:
  ‘singISTvignette.Rmd’

Error: Vignette re-building failed.
Execution halted