Miguel Julia
| Snapshot Date: 2026-05-21 13:45 -0400 (Thu, 21 May 2026) |
| git_url: https://git.bioconductor.org/packages/sincell |
| git_branch: devel |
| git_last_commit: 99d31de |
| git_last_commit_date: 2026-04-28 08:40:32 -0400 (Tue, 28 Apr 2026) |
| Back to Multiple platform build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-22 11:37 -0400 (Fri, 22 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4936 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-05-01 r89994) -- "Because it was There" | 4621 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2041/2378 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| sincell 1.45.0 (landing page) Miguel Julia
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | ||||||||||
| See other builds for sincell in R Universe. | ||||||||||||||
|
To the developers/maintainers of the sincell package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sincell.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: sincell |
| Version: 1.45.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data sincell |
| StartedAt: 2026-05-21 17:44:00 -0400 (Thu, 21 May 2026) |
| EndedAt: 2026-05-21 17:45:01 -0400 (Thu, 21 May 2026) |
| EllapsedTime: 60.7 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data sincell
###
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* checking for file ‘sincell/DESCRIPTION’ ... OK
* preparing ‘sincell’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘sincell-vignette.Rnw’ using knitr
Quitting from sincell-vignette.Rnw:170-186 [change_geneIDs]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.getAttributes()`:
! biomaRt error: looks like we're connecting to incompatible version of BioMart.
---
Backtrace:
x
1. \-biomaRt::useMart("ensembl", dataset = "hsapiens_gene_ensembl")
2. \-biomaRt:::.useMart(...)
3. \-biomaRt::useDataset(mart = mart, dataset = dataset, verbose = verbose)
4. \-biomaRt:::.getAttributes(mart, verbose = verbose)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'sincell-vignette.Rnw' failed with diagnostics:
biomaRt error: looks like we're connecting to incompatible version of BioMart.
--- failed re-building ‘sincell-vignette.Rnw’
SUMMARY: processing the following file failed:
‘sincell-vignette.Rnw’
Error: Vignette re-building failed.
Execution halted