Adam Park
| Snapshot Date: 2026-03-06 13:40 -0500 (Fri, 06 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/retrofit |
| git_branch: devel |
| git_last_commit: 88f4e91 |
| git_last_commit_date: 2025-10-29 11:22:56 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-07 11:33 -0500 (Sat, 07 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4453 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-02-28 r89501) -- "Unsuffered Consequences" | 3376 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1772/2357 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| retrofit 1.11.0 (landing page) Adam Park
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for retrofit in R Universe. | ||||||||||||||
|
To the developers/maintainers of the retrofit package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/retrofit.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: retrofit |
| Version: 1.11.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data retrofit |
| StartedAt: 2026-03-06 16:28:17 -0500 (Fri, 06 Mar 2026) |
| EndedAt: 2026-03-06 16:28:32 -0500 (Fri, 06 Mar 2026) |
| EllapsedTime: 15.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data retrofit
###
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* checking for file ‘retrofit/DESCRIPTION’ ... OK
* preparing ‘retrofit’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘ColonVignette.Rmd’ using rmarkdown
2026-03-06 16:28:26.525 R[54097:112593321] XType: Using static font registry.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpR0LsCL/Rbuildd139701b6177/retrofit/vignettes/ColonVignette_files/figure-html/visualize correlation matrix between the sc reference and W-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpR0LsCL/Rbuildd139701b6177/retrofit/vignettes/ColonVignette_files/figure-html/visualize correlation matrix marker-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpR0LsCL/Rbuildd139701b6177/retrofit/vignettes/ColonVignette_files/figure-html/unnamed-chunk-4-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpR0LsCL/Rbuildd139701b6177/retrofit/vignettes/ColonVignette_files/figure-html/unnamed-chunk-5-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpR0LsCL/Rbuildd139701b6177/retrofit/vignettes/ColonVignette_files/figure-html/unnamed-chunk-6-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpR0LsCL/Rbuildd139701b6177/retrofit/vignettes/ColonVignette_files/figure-html/unnamed-chunk-7-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpR0LsCL/Rbuildd139701b6177/retrofit/vignettes/ColonVignette_files/figure-html/unnamed-chunk-8-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpR0LsCL/Rbuildd139701b6177/retrofit/vignettes/ColonVignette_files/figure-html/unnamed-chunk-9-1.png" but not available.
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpR0LsCL/Rbuildd139701b6177/retrofit/vignettes/ColonVignette_files/figure-html/unnamed-chunk-10-1.png" but not available.
--- finished re-building ‘ColonVignette.Rmd’
--- re-building ‘SimulationVignette.Rmd’ using rmarkdown
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpR0LsCL/Rbuildd139701b6177/retrofit/vignettes/SimulationVignette_files/figure-html/visualize_correlations-1.png" but not available.
Quitting from SimulationVignette.Rmd:139-157 [visualize_rmse]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'DescTools'
---
Backtrace:
▆
1. ├─base::data.frame(...)
2. ├─base::paste(...)
3. └─base::loadNamespace(x)
4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
5. └─base (local) withOneRestart(expr, restarts[[1L]])
6. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'SimulationVignette.Rmd' failed with diagnostics:
there is no package called 'DescTools'
--- failed re-building ‘SimulationVignette.Rmd’
SUMMARY: processing the following file failed:
‘SimulationVignette.Rmd’
Error: Vignette re-building failed.
Execution halted