Lara Selles Vidal
| Snapshot Date: 2025-12-31 13:40 -0500 (Wed, 31 Dec 2025) |
| git_url: https://git.bioconductor.org/packages/ncRNAtools |
| git_branch: devel |
| git_last_commit: b6e3b93 |
| git_last_commit_date: 2025-10-29 11:02:04 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-01-01 11:35 -0500 (Thu, 01 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-12-22 r89219) -- "Unsuffered Consequences" | 4808 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4593 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1434/2332 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ncRNAtools 1.21.0 (landing page) Lara Selles Vidal
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the ncRNAtools package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ncRNAtools.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ncRNAtools |
| Version: 1.21.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ncRNAtools |
| StartedAt: 2025-12-31 17:09:37 -0500 (Wed, 31 Dec 2025) |
| EndedAt: 2025-12-31 17:09:50 -0500 (Wed, 31 Dec 2025) |
| EllapsedTime: 13.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ncRNAtools
###
##############################################################################
##############################################################################
* checking for file ‘ncRNAtools/DESCRIPTION’ ... OK
* preparing ‘ncRNAtools’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘ncRNAtools.Rmd’ using rmarkdown
Quitting from ncRNAtools.Rmd:163-178 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `FUN()`:
! object of type 'externalptr' is not subsettable
---
Backtrace:
▆
1. └─ncRNAtools::rnaCentralGenomicCoordinatesSearch(...)
2. ├─base::grepl("^URS", unlist(lapply(parsedResult, `[`, "external_name")))
3. │ └─base::is.factor(x)
4. ├─base::unlist(lapply(parsedResult, `[`, "external_name"))
5. └─base::lapply(parsedResult, `[`, "external_name")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'ncRNAtools.Rmd' failed with diagnostics:
object of type 'externalptr' is not subsettable
--- failed re-building ‘ncRNAtools.Rmd’
SUMMARY: processing the following file failed:
‘ncRNAtools.Rmd’
Error: Vignette re-building failed.
Execution halted