Aditya Bhagwat
| Snapshot Date: 2026-01-23 13:40 -0500 (Fri, 23 Jan 2026) |
| git_url: https://git.bioconductor.org/packages/multicrispr |
| git_branch: devel |
| git_last_commit: 67e223f |
| git_last_commit_date: 2025-10-29 10:59:55 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-01-24 11:35 -0500 (Sat, 24 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4811 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4545 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1407/2345 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| multicrispr 1.21.0 (landing page) Aditya Bhagwat
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the multicrispr package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/multicrispr.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: multicrispr |
| Version: 1.21.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data multicrispr |
| StartedAt: 2026-01-23 17:11:48 -0500 (Fri, 23 Jan 2026) |
| EndedAt: 2026-01-23 17:12:13 -0500 (Fri, 23 Jan 2026) |
| EllapsedTime: 25.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data multicrispr
###
##############################################################################
##############################################################################
* checking for file ‘multicrispr/DESCRIPTION’ ... OK
* preparing ‘multicrispr’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘crispr_grna_design.Rmd’ using rmarkdown
2026-01-23 17:12:11.707 R[12064:824987315] XType: Using static font registry.
Quitting from crispr_grna_design.Rmd:126-130 [unnamed-chunk-8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 1/1 in VECTOR_ELT
---
Backtrace:
▆
1. └─multicrispr::genefile_to_granges(entrezfile, txdb, complement = TRUE)
2. └─multicrispr::genes_to_granges(...)
3. └─multicrispr:::make_unique_names(gr, "T")
4. └─multicrispr:::uniquify(names(x))
5. ├─dt[, `:=`(N, .N), by = "x"]
6. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), by = "x")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'crispr_grna_design.Rmd' failed with diagnostics:
attempt access index 1/1 in VECTOR_ELT
--- failed re-building ‘crispr_grna_design.Rmd’
--- re-building ‘genome_arithmetics.Rmd’ using rmarkdown
Quitting from genome_arithmetics.Rmd:26-35 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 1/1 in VECTOR_ELT
---
Backtrace:
▆
1. └─multicrispr::char_to_granges(...)
2. └─multicrispr:::make_unique_names(gr, "T")
3. └─multicrispr:::uniquify(names(x))
4. ├─dt[, `:=`(N, .N), by = "x"]
5. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), by = "x")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'genome_arithmetics.Rmd' failed with diagnostics:
attempt access index 1/1 in VECTOR_ELT
--- failed re-building ‘genome_arithmetics.Rmd’
--- re-building ‘prime_editing.Rmd’ using rmarkdown
Quitting from prime_editing.Rmd:111-117 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 1/1 in VECTOR_ELT
---
Backtrace:
▆
1. └─multicrispr::char_to_granges(c(PRNP = "chr20:4699600:+"), bsgenome)
2. └─multicrispr:::make_unique_names(gr, "T")
3. └─multicrispr:::uniquify(names(x))
4. ├─dt[, `:=`(N, .N), by = "x"]
5. └─data.table:::`[.data.table`(dt, , `:=`(N, .N), by = "x")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'prime_editing.Rmd' failed with diagnostics:
attempt access index 1/1 in VECTOR_ELT
--- failed re-building ‘prime_editing.Rmd’
SUMMARY: processing the following files failed:
‘crispr_grna_design.Rmd’ ‘genome_arithmetics.Rmd’ ‘prime_editing.Rmd’
Error: Vignette re-building failed.
Execution halted