| Back to Multiple platform build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-03-14 11:34 -0400 (Sat, 14 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4837 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences" | 4050 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1196/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| maSigPro 1.83.0 (landing page) Maria Jose Nueda
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| See other builds for maSigPro in R Universe. | ||||||||||||||
|
To the developers/maintainers of the maSigPro package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/maSigPro.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: maSigPro |
| Version: 1.83.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings maSigPro_1.83.0.tar.gz |
| StartedAt: 2026-03-13 19:11:08 -0400 (Fri, 13 Mar 2026) |
| EndedAt: 2026-03-13 19:12:03 -0400 (Fri, 13 Mar 2026) |
| EllapsedTime: 55.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: maSigPro.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings maSigPro_1.83.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/maSigPro.Rcheck’
* using R Under development (unstable) (2026-03-01 r89506)
* using platform: aarch64-apple-darwin23
* R was compiled by
Apple clang version 17.0.0 (clang-1700.3.19.1)
GNU Fortran (GCC) 14.2.0
* running under: macOS Sonoma 14.8.3
* using session charset: UTF-8
* current time: 2026-03-13 23:11:08 UTC
* using option ‘--no-vignettes’
* checking for file ‘maSigPro/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘maSigPro’ version ‘1.83.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘maSigPro’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
maSigPro.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL maSigPro ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’ * installing *source* package ‘maSigPro’ ... ** this is package ‘maSigPro’ version ‘1.83.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (maSigPro)
maSigPro.Rcheck/maSigPro-Ex.timings
| name | user | system | elapsed | |
| ISOdata | 3.348 | 0.140 | 3.665 | |
| ISOdesign | 3.314 | 0.133 | 3.601 | |
| IsoModel | 3.440 | 0.129 | 3.726 | |
| IsoPlot | 3.372 | 0.129 | 3.661 | |
| NBdata | 0.000 | 0.001 | 0.001 | |
| NBdesign | 0 | 0 | 0 | |
| PlotGroups | 0.009 | 0.001 | 0.010 | |
| PlotProfiles | 0.001 | 0.000 | 0.002 | |
| PodiumChange | 3.379 | 0.141 | 3.640 | |
| T.fit | 1.526 | 0.014 | 1.623 | |
| average.rows | 0 | 0 | 0 | |
| data.abiotic | 0.001 | 0.001 | 0.002 | |
| edesign.abiotic | 0.001 | 0.000 | 0.001 | |
| edesignCT | 0.000 | 0.001 | 0.000 | |
| edesignDR | 0 | 0 | 0 | |
| get.siggenes | 0.730 | 0.007 | 0.770 | |
| getDS | 3.424 | 0.117 | 3.684 | |
| getDSPatterns | 3.426 | 0.129 | 3.733 | |
| i.rank | 0 | 0 | 0 | |
| maSigProUsersGuide | 0.002 | 0.002 | 0.005 | |
| make.design.matrix | 0.001 | 0.003 | 0.005 | |
| p.vector | 0.495 | 0.009 | 0.541 | |
| position | 0.000 | 0.001 | 0.000 | |
| reg.coeffs | 0 | 0 | 0 | |
| see.genes | 0.228 | 0.011 | 0.250 | |
| seeDS | 3.332 | 0.131 | 3.580 | |
| stepback | 0.006 | 0.000 | 0.007 | |
| stepfor | 0.022 | 0.000 | 0.023 | |
| suma2Venn | 0.007 | 0.001 | 0.008 | |
| tableDS | 3.381 | 0.133 | 3.660 | |
| two.ways.stepback | 0.020 | 0.000 | 0.021 | |
| two.ways.stepfor | 0.026 | 0.001 | 0.031 | |