| Back to Multiple platform build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-01-07 11:35 -0500 (Wed, 07 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-12-22 r89219) -- "Unsuffered Consequences" | 4815 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4593 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 766/2332 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| flowWorkspace 4.23.1 (landing page) Greg Finak
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the flowWorkspace package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowWorkspace.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: flowWorkspace |
| Version: 4.23.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL flowWorkspace |
| StartedAt: 2026-01-06 15:08:49 -0500 (Tue, 06 Jan 2026) |
| EndedAt: 2026-01-06 15:08:51 -0500 (Tue, 06 Jan 2026) |
| EllapsedTime: 2.2 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL flowWorkspace
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library’
* installing *source* package ‘flowWorkspace’ ...
** this is package ‘flowWorkspace’ version ‘4.23.1’
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using C++17
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -Wno-pedantic -w -Wfatal-errors -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/cpp11/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/RProtoBufLib/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/cytolib/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c R_API.cpp -o R_API.o
In file included from R_API.cpp:10:
In file included from /Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/cpp11/include/cpp11.hpp:7:
/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/cpp11/include/cpp11/data_frame.hpp:29:9: fatal error: use of undeclared identifier 'R_nrow'; did you mean 'Rf_nrows'?
return R_nrow(x);
^~~~~~
Rf_nrows
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:568:5: note: 'Rf_nrows' declared here
int Rf_nrows(SEXP);
^
1 error generated.
make: *** [R_API.o] Error 1
ERROR: compilation failed for package ‘flowWorkspace’
* removing ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/flowWorkspace’
* restoring previous ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/flowWorkspace’