Nick Borcherding
| Snapshot Date: 2026-03-11 13:40 -0400 (Wed, 11 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/escape |
| git_branch: devel |
| git_last_commit: f1d3041 |
| git_last_commit_date: 2026-01-04 15:39:15 -0400 (Sun, 04 Jan 2026) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-12 11:34 -0400 (Thu, 12 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4806 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences" | 4049 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 703/2360 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| escape 2.7.2 (landing page) Nick Borcherding
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for escape in R Universe. | ||||||||||||||
|
To the developers/maintainers of the escape package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/escape.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: escape |
| Version: 2.7.2 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data escape |
| StartedAt: 2026-03-11 16:02:23 -0400 (Wed, 11 Mar 2026) |
| EndedAt: 2026-03-11 16:02:41 -0400 (Wed, 11 Mar 2026) |
| EllapsedTime: 17.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data escape
###
##############################################################################
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* checking for file ‘escape/DESCRIPTION’ ... OK
* preparing ‘escape’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘escape.Rmd’ using rmarkdown
Quitting from escape.Rmd:188-200 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! BiocParallel errors
1 remote errors, element index: 1
0 unevaluated and other errors
first remote error:
Error: GSVA not installed, install or choose a different `method`.
---
Backtrace:
▆
1. └─escape::escape.matrix(...)
2. └─escape:::.plapply(...)
3. ├─BiocParallel::bplapply(X, FUN, ..., BPPARAM = BPPARAM)
4. └─BiocParallel::bplapply(X, FUN, ..., BPPARAM = BPPARAM)
5. └─BiocParallel:::.bpinit(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'escape.Rmd' failed with diagnostics:
BiocParallel errors
1 remote errors, element index: 1
0 unevaluated and other errors
first remote error:
Error: GSVA not installed, install or choose a different `method`.
--- failed re-building ‘escape.Rmd’
SUMMARY: processing the following file failed:
‘escape.Rmd’
Error: Vignette re-building failed.
Execution halted