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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data chromPlot
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* checking for file ‘chromPlot/DESCRIPTION’ ... OK
* preparing ‘chromPlot’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘chromPlot.Rnw’ using Sweave
Loading required package: biomaRt
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: generics
Attaching package: ‘generics’
The following objects are masked from ‘package:base’:
as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,
setequal, union
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply,
mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
rank, rbind, rownames, sapply, saveRDS, table, tapply, unique,
unsplit, which.max, which.min
Loading required package: S4Vectors
Attaching package: ‘S4Vectors’
The following object is masked from ‘package:utils’:
findMatches
The following objects are masked from ‘package:base’:
I, expand.grid, unname
Loading required package: IRanges
Loading required package: Seqinfo
Error: processing vignette 'chromPlot.Rnw' failed with diagnostics:
chunk 2 (label = createGraph0)
Error in library("TxDb.Hsapiens.UCSC.hg19.knownGene") :
there is no package called ‘TxDb.Hsapiens.UCSC.hg19.knownGene’
--- failed re-building ‘chromPlot.Rnw’
SUMMARY: processing the following file failed:
‘chromPlot.Rnw’
Error: Vignette re-building failed.
Execution halted
