| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-09 11:33 -0400 (Mon, 09 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4508 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-02-28 r89501) -- "Unsuffered Consequences" | 3381 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2109/2360 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SPLINTER 1.37.0 (landing page) Diana Low
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| See other builds for SPLINTER in R Universe. | ||||||||||||||
|
To the developers/maintainers of the SPLINTER package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SPLINTER.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SPLINTER |
| Version: 1.37.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:SPLINTER.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings SPLINTER_1.37.0.tar.gz |
| StartedAt: 2026-03-09 03:57:50 -0400 (Mon, 09 Mar 2026) |
| EndedAt: 2026-03-09 04:04:24 -0400 (Mon, 09 Mar 2026) |
| EllapsedTime: 394.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SPLINTER.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:SPLINTER.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings SPLINTER_1.37.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/SPLINTER.Rcheck’
* using R Under development (unstable) (2026-03-05 r89546)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-03-09 07:57:50 UTC
* checking for file ‘SPLINTER/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SPLINTER’ version ‘1.37.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SPLINTER’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ...* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
eventPlot 12.408 0.353 12.764
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
SPLINTER.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL SPLINTER ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’ * installing *source* package ‘SPLINTER’ ... ** this is package ‘SPLINTER’ version ‘1.37.0’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SPLINTER)
SPLINTER.Rcheck/SPLINTER-Ex.timings
| name | user | system | elapsed | |
| acceptor.m | 0.001 | 0.000 | 0.001 | |
| addEnsemblAnnotation | 0.005 | 0.000 | 0.005 | |
| callPrimer3 | 0 | 0 | 0 | |
| checkPrimer | 0.068 | 0.000 | 0.068 | |
| compatible_cds | 0.000 | 0.001 | 0.001 | |
| compatible_tx | 0.000 | 0.001 | 0.001 | |
| donor.m | 0.001 | 0.000 | 0.001 | |
| eventOutcomeCompare | 1.263 | 0.052 | 1.315 | |
| eventOutcomeTranslate | 0.352 | 0.043 | 0.395 | |
| eventPlot | 12.408 | 0.353 | 12.764 | |
| extendROI | 0.659 | 0.009 | 0.668 | |
| extractSpliceEvents | 0.002 | 0.000 | 0.003 | |
| extractSpliceSites | 0.086 | 0.001 | 0.087 | |
| findCompatibleEvents | 0.313 | 0.001 | 0.314 | |
| findCompatibleExon | 0.199 | 0.001 | 0.200 | |
| findTX | 0.012 | 0.000 | 0.013 | |
| getPCRsizes | 2.248 | 0.179 | 2.427 | |
| getRegionDNA | 0.244 | 0.008 | 0.252 | |
| insertRegion | 0.181 | 0.003 | 0.184 | |
| makeROI | 0.245 | 0.000 | 0.244 | |
| makeUniqueIDs | 0.003 | 0.000 | 0.003 | |
| pcr_result1 | 0.000 | 0.001 | 0.000 | |
| plot_seqlogo | 0.04 | 0.00 | 0.04 | |
| primers | 0.001 | 0.000 | 0.001 | |
| psiPlot | 0.327 | 0.002 | 0.329 | |
| region_minus_exon | 0.001 | 0.000 | 0.001 | |
| roi | 0.001 | 0.000 | 0.000 | |
| shapiroAcceptor | 1.760 | 0.101 | 1.861 | |
| shapiroDonor | 0.363 | 0.010 | 0.374 | |
| splice_data | 0.000 | 0.000 | 0.001 | |
| splice_fasta | 0.000 | 0.001 | 0.000 | |
| splitPCRhit | 0.002 | 0.000 | 0.002 | |
| thecds | 0.000 | 0.000 | 0.001 | |
| theexons | 0.001 | 0.000 | 0.000 | |
| valid_cds | 0.000 | 0.001 | 0.000 | |
| valid_tx | 0.001 | 0.000 | 0.001 | |