| Back to Multiple platform build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-04-13 11:35 -0400 (Mon, 13 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 alpha (2026-04-05 r89794) | 4919 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 alpha (2026-04-08 r89818) | 4632 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2070/2390 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SMAD 1.27.2 (landing page) Qingzhou Zhang
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| See other builds for SMAD in R Universe. | ||||||||||||||
|
To the developers/maintainers of the SMAD package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SMAD.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SMAD |
| Version: 1.27.2 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL SMAD |
| StartedAt: 2026-04-12 15:20:11 -0400 (Sun, 12 Apr 2026) |
| EndedAt: 2026-04-12 15:20:16 -0400 (Sun, 12 Apr 2026) |
| EllapsedTime: 5.6 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL SMAD
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* installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’
* installing *source* package ‘SMAD’ ...
** this is package ‘SMAD’ version ‘1.27.2’
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0’
g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I/usr/local/include -Inlopt/api -Inlopt -Inlopt/cobyla -Inlopt/util -Isaint_common -Isaint_spc -Isaint_int -fpic -g -O2 -Wall -Werror=format-security -c SpcEntry.cpp -o SpcEntry.o
In file included from saint_spc/SpcGlobals.hpp:26,
from SpcEntry.cpp:19:
saint_spc/SpcFastmat.hpp:29:20: error: expected unqualified-id before ‘)’ token
29 | Fastmat<T>();
| ^
make: *** [/home/biocbuild/bbs-3.23-bioc/R/etc/Makeconf:197: SpcEntry.o] Error 1
ERROR: compilation failed for package ‘SMAD’
* removing ‘/home/biocbuild/bbs-3.23-bioc/R/site-library/SMAD’
* restoring previous ‘/home/biocbuild/bbs-3.23-bioc/R/site-library/SMAD’