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This page was generated on 2026-04-01 13:06 -0400 (Wed, 01 Apr 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.6.0 alpha (2026-03-30 r89742) 4816
kjohnson3macOS 13.7.7 Venturaarm644.6.0 alpha (2026-03-28 r89739) 4539
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1724/2374HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rarr 1.11.35  (landing page)
Hugo Gruson
Snapshot Date: 2026-03-31 13:40 -0400 (Tue, 31 Mar 2026)
git_url: https://git.bioconductor.org/packages/Rarr
git_branch: devel
git_last_commit: 8e11718
git_last_commit_date: 2026-03-31 08:35:14 -0400 (Tue, 31 Mar 2026)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR    ERROR  skipped
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  YES
See other builds for Rarr in R Universe.

BUILD results for Rarr on nebbiolo1

To the developers/maintainers of the Rarr package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rarr.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Rarr
Version: 1.11.35
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Rarr
StartedAt: 2026-03-31 19:22:12 -0400 (Tue, 31 Mar 2026)
EndedAt: 2026-03-31 19:22:49 -0400 (Tue, 31 Mar 2026)
EllapsedTime: 37.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Rarr
###
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* checking for file ‘Rarr/DESCRIPTION’ ... OK
* preparing ‘Rarr’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package (it is needed to build vignettes)
      -----------------------------------
* installing *source* package ‘Rarr’ ...
** this is package ‘Rarr’ version ‘1.11.35’
** using staged installation
R was not built as a library
NO_RLIB=-DNO_RLIB
R_CPPFLAGS=
configure: is Bioc build machine
configure: configuring the Zstd filter...
configure: compiling bundled Zstd library
configure: configuring the BLOSC filter...
configure: compiling bundled BLOSC library
checking whether C compiler accepts -msse2... no
configure: Bioc build machine; disabling MAVX2
checking for gcc __builtin_cpu_init function... (cached) true
checking for x86 sse2 instruction support... yes
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/compression_tools/blosc/lib/blosc-1.21.6/Makefile
config.status: creating src/compression_tools/blosc/Makefile
config.status: creating src/compression_tools/blosc/lib/snappy-1.2.2/Makefile
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0’
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include   -g -O2 -Wall -Werror=format-security -fpic  -g -O2  -Wall -Werror=format-security -c Rarr.c -o Rarr.o
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include   -g -O2 -Wall -Werror=format-security -fpic  -g -O2  -Wall -Werror=format-security -c bit64_conversion.c -o bit64_conversion.o
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include   -g -O2 -Wall -Werror=format-security -fpic  -g -O2  -Wall -Werror=format-security -c compress.c -o compress.o
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include   -g -O2 -Wall -Werror=format-security -fpic  -g -O2  -Wall -Werror=format-security -c decompress.c -o decompress.o
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include   -g -O2 -Wall -Werror=format-security -fpic  -g -O2  -Wall -Werror=format-security -c float16_conversion.c -o float16_conversion.o
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include   -g -O2 -Wall -Werror=format-security -fpic  -g -O2  -Wall -Werror=format-security -c type_conversion.c -o type_conversion.o
make -C compression_tools/zstd-1.5.7
make[1]: Entering directory '/tmp/RtmpPu3GK1/Rbuild311d33db2ffd4/Rarr/src/compression_tools/zstd-1.5.7'
gcc -std=gnu2x -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/debug.c -o common/debug.o
gcc -std=gnu2x -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/entropy_common.c -o common/entropy_common.o
gcc -std=gnu2x -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/error_private.c -o common/error_private.o
gcc -std=gnu2x -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/fse_decompress.c -o common/fse_decompress.o
gcc -std=gnu2x -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/pool.c -o common/pool.o -o common/pool.o
gcc -std=gnu2x -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/threading.c -o common/threading.o
gcc -std=gnu2x -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/xxhash.c -o common/xxhash.o
gcc -std=gnu2x -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/zstd_common.c -o common/zstd_common.o
gcc -std=gnu2x -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/fse_compress.c -o compress/fse_compress.o
gcc -std=gnu2x -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/hist.c -o compress/hist.o
gcc -std=gnu2x -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/huf_compress.c -o compress/huf_compress.o
gcc -std=gnu2x -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_compress.c -o compress/zstd_compress.o
gcc -std=gnu2x -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_compress_literals.c -o compress/zstd_compress_literals.o
gcc -std=gnu2x -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_compress_sequences.c -o compress/zstd_compress_sequences.o
gcc -std=gnu2x -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_compress_superblock.c -o compress/zstd_compress_superblock.o
gcc -std=gnu2x -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_double_fast.c -o compress/zstd_double_fast.o
gcc -std=gnu2x -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_fast.c -o compress/zstd_fast.o
gcc -std=gnu2x -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_lazy.c -o compress/zstd_lazy.o
gcc -std=gnu2x -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_ldm.c -o compress/zstd_ldm.o
gcc -std=gnu2x -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_opt.c -o compress/zstd_opt.o
gcc -std=gnu2x    -c -o compress/zstd_preSplit.o compress/zstd_preSplit.c
gcc -std=gnu2x -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstdmt_compress.c -o compress/zstdmt_compress.o
gcc -std=gnu2x -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c decompress/huf_decompress.c -o decompress/huf_decompress.o
gcc -std=gnu2x -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c decompress/zstd_ddict.c -o decompress/zstd_ddict.o
gcc -std=gnu2x -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c decompress/zstd_decompress.c -o decompress/zstd_decompress.o
gcc -std=gnu2x -g -O2 -Wall -Werror=format-security -fpic -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c decompress/zstd_decompress_block.c -o decompress/zstd_decompress_block.o
rm -f libzstd.a
ar cq libzstd.a common/debug.o common/entropy_common.o common/error_private.o common/fse_decompress.o common/pool.o common/threading.o common/xxhash.o common/zstd_common.o compress/fse_compress.o compress/hist.o compress/huf_compress.o compress/zstd_compress.o compress/zstd_compress_literals.o compress/zstd_compress_sequences.o compress/zstd_compress_superblock.o compress/zstd_double_fast.o compress/zstd_fast.o compress/zstd_lazy.o compress/zstd_ldm.o compress/zstd_opt.o compress/zstd_preSplit.o compress/zstdmt_compress.o decompress/huf_decompress.o decompress/zstd_ddict.o decompress/zstd_decompress.o decompress/zstd_decompress_block.o
ranlib libzstd.a
make[1]: Leaving directory '/tmp/RtmpPu3GK1/Rbuild311d33db2ffd4/Rarr/src/compression_tools/zstd-1.5.7'
make -C compression_tools/blosc
make[1]: Entering directory '/tmp/RtmpPu3GK1/Rbuild311d33db2ffd4/Rarr/src/compression_tools/blosc'
make -C lib/snappy-1.2.2
make[2]: Entering directory '/tmp/RtmpPu3GK1/Rbuild311d33db2ffd4/Rarr/src/compression_tools/blosc/lib/snappy-1.2.2'
g++ -std=gnu++20 -g -O2 -Wall -Werror=format-security -fpic -I/usr/local/include  -DUSING_R -DNO_RLIB -c snappy.cc
snappy.cc:83:10: fatal error: R_ext/Error.h: No such file or directory
   83 | #include <R_ext/Error.h>
      |          ^~~~~~~~~~~~~~~
compilation terminated.
make[2]: *** [Makefile:13: snappy.o] Error 1
make[2]: Leaving directory '/tmp/RtmpPu3GK1/Rbuild311d33db2ffd4/Rarr/src/compression_tools/blosc/lib/snappy-1.2.2'
make[1]: *** [Makefile:38: lib/snappy-1.2.2] Error 2
make[1]: Leaving directory '/tmp/RtmpPu3GK1/Rbuild311d33db2ffd4/Rarr/src/compression_tools/blosc'
make: *** [Makevars:23: libblosc.a] Error 2
ERROR: compilation failed for package ‘Rarr’
* removing ‘/tmp/RtmpPu3GK1/Rinst311d371ec251e/Rarr’
      -----------------------------------
ERROR: package installation failed