Multiple platform build/check report for BioC 3.23 - BUILD results for ExperimentHub on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences"	4719
kjohnson3	macOS 13.7.7 Ventura	arm64	R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences"	2847
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for ExperimentHub on kjohnson3

To the developers/maintainers of the ExperimentHub package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ExperimentHub.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: ExperimentHub

Version: 3.1.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ExperimentHub

StartedAt: 2026-03-10 15:22:53 -0400 (Tue, 10 Mar 2026)

EndedAt: 2026-03-10 15:23:03 -0400 (Tue, 10 Mar 2026)

EllapsedTime: 10.2 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ExperimentHub
###
##############################################################################
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* checking for file ‘ExperimentHub/DESCRIPTION’ ... OK
* preparing ‘ExperimentHub’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘ExperimentHub.Rmd’ using rmarkdown

Quitting from ExperimentHub.Rmd:140-142 [dm3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! failed to load resource
  name: EH166
  title: ERR188297
  reason: require("GenomicAlignments") failed: use BiocManager::install() to install package?
---
Backtrace:
     ▆
  1. ├─apData[["EH166"]]
  2. └─apData[["EH166"]]
  3.   └─ExperimentHub (local) .local(x, i, j = j, ...)
  4.     ├─methods::callNextMethod(...)
  5.     │ └─base::eval(call, callEnv)
  6.     │   └─base::eval(call, callEnv)
  7.     └─AnnotationHub (local) .nextMethod(...)
  8.       └─AnnotationHub (local) .local(x, i, j = j, ...)
  9.         └─AnnotationHub:::.Hub_get1(...)
 10.           └─base::tryCatch(...)
 11.             └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 12.               └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 13.                 └─value[[3L]](cond)
 14.                   └─base::tryCatch(...)
 15.                     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 16.                       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 17.                         └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ExperimentHub.Rmd' failed with diagnostics:
failed to load resource
  name: EH166
  title: ERR188297
  reason: require("GenomicAlignments") failed: use BiocManager::install() to install package?
--- failed re-building ‘ExperimentHub.Rmd’

SUMMARY: processing the following file failed:
  ‘ExperimentHub.Rmd’

Error: Vignette re-building failed.
Execution halted