Venkatraman E. Seshan
| Snapshot Date: 2026-03-11 13:40 -0400 (Wed, 11 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/DNAcopy |
| git_branch: devel |
| git_last_commit: a82e7ed |
| git_last_commit_date: 2025-10-29 09:54:58 -0400 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-12 11:34 -0400 (Thu, 12 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4806 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences" | 4049 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 613/2360 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| DNAcopy 1.85.0 (landing page) Venkatraman E. Seshan
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| See other builds for DNAcopy in R Universe. | ||||||||||||||
|
To the developers/maintainers of the DNAcopy package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DNAcopy.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: DNAcopy |
| Version: 1.85.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL DNAcopy |
| StartedAt: 2026-03-11 15:01:09 -0400 (Wed, 11 Mar 2026) |
| EndedAt: 2026-03-11 15:01:14 -0400 (Wed, 11 Mar 2026) |
| EllapsedTime: 4.7 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL DNAcopy
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’
* installing *source* package ‘DNAcopy’ ...
** this is package ‘DNAcopy’ version ‘1.85.0’
** using staged installation
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.3.9.4)’
using Fortran compiler: ‘GNU Fortran (GCC) 14.2.0’
using SDK: ‘MacOSX14.4.sdk’
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c cbsWtstats.f -o cbsWtstats.o
cbsWtstats.f:282:72:
282 | iseg(1) = tmaxi
| ^
Warning: 'tmaxi' may be used uninitialized [-Wmaybe-uninitialized]
cbsWtstats.f:17:16:
17 | 2 tmaxi, tmaxj, nal0
| ^
note: 'tmaxi' was declared here
cbsWtstats.f:283:72:
283 | iseg(2) = tmaxj
| ^
Warning: 'tmaxj' may be used uninitialized [-Wmaybe-uninitialized]
cbsWtstats.f:17:23:
17 | 2 tmaxi, tmaxj, nal0
| ^
note: 'tmaxj' was declared here
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c cbststats.f -o cbststats.o
cbststats.f:258:72:
258 | tmaxj = sxmxi + i2j
| ^
Warning: 'sxmxi' may be used uninitialized [-Wmaybe-uninitialized]
cbststats.f:11:63:
11 | 1 nb2, bi, bj, ilo, ihi, jlo, jhi, alenmax, i2j, sxmxi,
| ^
note: 'sxmxi' was declared here
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c changepoints-wtd.f -o changepoints-wtd.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c changepoints.f -o changepoints.o
/opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c esegment.f -o esegment.o
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c flchoose.c -o flchoose.o
error: invalid value 'gnu23' in '-std=gnu23'
note: use 'c89', 'c90', or 'iso9899:1990' for 'ISO C 1990' standard
note: use 'iso9899:199409' for 'ISO C 1990 with amendment 1' standard
note: use 'gnu89' or 'gnu90' for 'ISO C 1990 with GNU extensions' standard
note: use 'c99' or 'iso9899:1999' for 'ISO C 1999' standard
note: use 'gnu99' for 'ISO C 1999 with GNU extensions' standard
note: use 'c11' or 'iso9899:2011' for 'ISO C 2011' standard
note: use 'gnu11' for 'ISO C 2011 with GNU extensions' standard
note: use 'c17', 'iso9899:2017', 'c18', or 'iso9899:2018' for 'ISO C 2017' standard
note: use 'gnu17' or 'gnu18' for 'ISO C 2017 with GNU extensions' standard
note: use 'c2x' for 'Working Draft for ISO C2x' standard
note: use 'gnu2x' for 'Working Draft for ISO C2x with GNU extensions' standard
make: *** [flchoose.o] Error 1
ERROR: compilation failed for package ‘DNAcopy’
* removing ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library/DNAcopy’