Sean Davis
| Snapshot Date: 2026-03-12 13:40 -0400 (Thu, 12 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/BiocPkgTools |
| git_branch: devel |
| git_last_commit: 121890f |
| git_last_commit_date: 2025-11-18 13:56:40 -0400 (Tue, 18 Nov 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-13 11:33 -0400 (Fri, 13 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4819 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences" | 4049 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 202/2360 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BiocPkgTools 1.29.2 (landing page) Sean Davis
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| See other builds for BiocPkgTools in R Universe. | ||||||||||||||
|
To the developers/maintainers of the BiocPkgTools package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiocPkgTools.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: BiocPkgTools |
| Version: 1.29.2 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocPkgTools |
| StartedAt: 2026-03-12 16:26:03 -0400 (Thu, 12 Mar 2026) |
| EndedAt: 2026-03-12 16:27:13 -0400 (Thu, 12 Mar 2026) |
| EllapsedTime: 70.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocPkgTools
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* checking for file ‘BiocPkgTools/DESCRIPTION’ ... OK
* preparing ‘BiocPkgTools’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘BiocPkgTools.Rmd’ using rmarkdown
Quitting from BiocPkgTools.Rmd:303-309 [unnamed-chunk-17]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! 'packages.rds' not found in CRAN 'repo'
---
Backtrace:
▆
1. └─BiocPkgTools::buildPkgDependencyDataFrame(...)
2. └─BiocPkgTools::biocPkgList(...)
3. └─base::lapply(...)
4. └─BiocPkgTools (local) FUN(X[[i]], ...)
5. └─BiocPkgTools:::get_CRAN_pkg_rds()
6. └─BiocPkgTools:::read_CRAN_url(cran_url)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'BiocPkgTools.Rmd' failed with diagnostics:
'packages.rds' not found in CRAN 'repo'
--- failed re-building ‘BiocPkgTools.Rmd’
SUMMARY: processing the following file failed:
‘BiocPkgTools.Rmd’
Error: Vignette re-building failed.
Execution halted