Back to Multiple platform build/check report for BioC 3.7 experimental data |
This page was generated on 2018-10-16 14:18:59 -0400 (Tue, 16 Oct 2018).
Package 273/342 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
RnBeads.hg19 1.12.0 RnBeadsAnnotationCreator
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ WARNINGS ] | ![]() |
Package: RnBeads.hg19 |
Version: 1.12.0 |
Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:RnBeads.hg19.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings RnBeads.hg19_1.12.0.tar.gz |
StartedAt: 2018-10-16 11:23:06 -0400 (Tue, 16 Oct 2018) |
EndedAt: 2018-10-16 11:47:46 -0400 (Tue, 16 Oct 2018) |
EllapsedTime: 1480.1 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: RnBeads.hg19.Rcheck |
Warnings: 2 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:RnBeads.hg19.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings RnBeads.hg19_1.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.7-data-experiment/meat/RnBeads.hg19.Rcheck’ * using R version 3.5.1 Patched (2018-07-12 r74967) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘RnBeads.hg19/DESCRIPTION’ ... OK * this is package ‘RnBeads.hg19’ version ‘1.12.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RnBeads.hg19’ can be installed ... OK * checking installed package size ... NOTE installed size is 136.9Mb sub-directories of 1Mb or more: data 136.8Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Package in Depends field not imported from: ‘GenomicRanges’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING Undocumented data sets: ‘rnb.set.example’ All user-level objects in a package should have documentation entries. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... NOTE Failed with error: 'package 'GenomicFeatures' could not be loaded' Error in .requirePackage(package) : unable to find required package 'RnBeads' Calls: <Anonymous> ... getClass -> getClassDef -> .classEnv -> .requirePackage Execution halted * checking data for ASCII and uncompressed saves ... WARNING Note: significantly better compression could be obtained by using R CMD build --resave-data old_size new_size compress CpG.RData 102.6Mb 67.0Mb xz probes27.RData 749Kb 494Kb xz probes450.RData 9.7Mb 6.3Mb xz probesEPIC.RData 14.7Mb 10.8Mb xz regions.RData 8.6Mb 4.2Mb xz small.example.object.RData 508Kb 365Kb xz * checking examples ... NONE * checking PDF version of manual ... OK * DONE Status: 2 WARNINGs, 3 NOTEs See ‘/home/biocbuild/bbs-3.7-data-experiment/meat/RnBeads.hg19.Rcheck/00check.log’ for details.
RnBeads.hg19.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL RnBeads.hg19 ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’ * installing *source* package ‘RnBeads.hg19’ ... ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (RnBeads.hg19)