Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-05-25 10:22:52 -0400 (Fri, 25 May 2018).
Package 1225/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
rexposome 1.2.0 Carles Hernandez-Ferrer
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | ![]() | ||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | ![]() |
Package: rexposome |
Version: 1.2.0 |
Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:rexposome.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings rexposome_1.2.0.tar.gz |
StartedAt: 2018-05-25 05:31:10 -0400 (Fri, 25 May 2018) |
EndedAt: 2018-05-25 05:37:14 -0400 (Fri, 25 May 2018) |
EllapsedTime: 364.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: rexposome.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:rexposome.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings rexposome_1.2.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/rexposome.Rcheck' * using R version 3.5.0 Patched (2018-05-03 r74699) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'rexposome/DESCRIPTION' ... OK * this is package 'rexposome' version '1.2.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'rexposome' can be installed ... OK * checking installed package size ... NOTE installed size is 6.1Mb sub-directories of 1Mb or more: data 2.8Mb extdata 2.2Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE imputeLOD: multiple local function definitions for 'faux' with different formal arguments plotHistogram,ExposomeSet: no visible binding for global variable '..density..' Undefined global functions or variables: ..density.. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed clustering-methods 28.67 0.05 28.94 plotCorrelation-methods 12.52 0.10 12.61 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed clustering-methods 20.27 0.02 22.28 plotCorrelation-methods 14.14 0.00 14.16 correlation-methods 5.45 0.02 5.47 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'C:/Users/biocbuild/bbs-3.7-bioc/meat/rexposome.Rcheck/00check.log' for details.
rexposome.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/rexposome_1.2.0.tar.gz && rm -rf rexposome.buildbin-libdir && mkdir rexposome.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rexposome.buildbin-libdir rexposome_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL rexposome_1.2.0.zip && rm rexposome_1.2.0.tar.gz rexposome_1.2.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 5210k 100 5210k 0 0 42.1M 0 --:--:-- --:--:-- --:--:-- 44.6M install for i386 * installing *source* package 'rexposome' ... ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rexposome' finding HTML links ... done ExWAS-class html ExposomeClust-class html ExposomeCorr-class html finding level-2 HTML links ... done ExposomePCA-class html ExposomeSet-class html classification-methods html clustering-methods html correlation-methods html ex_imp html expo html expo_c html expos-methods html exposureNames-methods html exwas-methods html familyNames-methods html highAndLow-methods html ilod-methods html imExposomeSet-class html imputation-methods html imputeLOD html loadExposome html loadImputed html mExWAS-class html me html mexwas-methods html ndim-methods html normalityTest-methods html pca-methods html phenotypeNames-methods html plot3PCA-methods html plotClassification-methods html plotCorrelation-methods html plotEXP-methods html plotEffect-methods html plotExwas-methods html plotFamily-methods html plotHistogram-methods html plotLOD-methods html plotMissings-methods html plotPCA-methods html plotPHE-methods html plotVolcano-methods html readExposome html rexposome html standardize-methods html tableLOD-methods html tableMissings-methods html tef-methods html toES html trans-methods html volcano_plot html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'rexposome' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'rexposome' as rexposome_1.2.0.zip * DONE (rexposome) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library' package 'rexposome' successfully unpacked and MD5 sums checked In R CMD INSTALL
rexposome.Rcheck/examples_i386/rexposome-Ex.timings
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rexposome.Rcheck/examples_x64/rexposome-Ex.timings
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