Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-11 10:49:54 -0400 (Thu, 11 Oct 2018).
Package 724/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
imageHTS 1.30.0 Joseph Barry
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | ![]() | ||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | ![]() |
Package: imageHTS |
Version: 1.30.0 |
Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe --arch i386 CMD check --no-multiarch --install=check:imageHTS.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings imageHTS_1.30.0.tar.gz |
StartedAt: 2018-10-11 02:39:08 -0400 (Thu, 11 Oct 2018) |
EndedAt: 2018-10-11 02:42:49 -0400 (Thu, 11 Oct 2018) |
EllapsedTime: 220.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: imageHTS.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe --arch i386 CMD check --no-multiarch --install=check:imageHTS.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings imageHTS_1.30.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/imageHTS.Rcheck' * using R version 3.5.1 Patched (2018-07-24 r75005) * using platform: i386-w64-mingw32 (32-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'imageHTS/DESCRIPTION' ... OK * this is package 'imageHTS' version '1.30.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .BBSoptions These were most likely included in error. See section 'Package structure' in the 'Writing R Extensions' manual. * checking for portable file names ... OK * checking whether package 'imageHTS' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed extractFeatures 16.86 1.89 18.75 countObjects 9.11 0.97 10.55 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.7-bioc/meat/imageHTS.Rcheck/00check.log' for details.
imageHTS.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe --arch i386 CMD INSTALL --no-multiarch imageHTS ### ############################################################################## ############################################################################## * installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library' * installing *source* package 'imageHTS' ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'imageHTS' finding HTML links ... done collectCellFeatures html countObjects html extractFeatures html fileHTS html getImageConf html getUnames html getWellFeatures html finding level-2 HTML links ... done highlightSegmentation html imageHTS html installCellPicker html makeCellHTS html parseDCF html parseImageConf html popCellPicker html prw2uname html readLearnTS html segmentATH html segmentWells html segmentYeastBF html summarizeWells html zprime html ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (imageHTS) Making 'packages.html' ... done In R CMD INSTALL
imageHTS.Rcheck/imageHTS-Ex.timings
name | user | system | elapsed | |
collectCellFeatures | 0 | 0 | 0 | |
countObjects | 9.11 | 0.97 | 10.55 | |
extractFeatures | 16.86 | 1.89 | 18.75 | |
fileHTS | 1.75 | 0.01 | 2.51 | |
getImageConf | 1.08 | 0.00 | 1.08 | |
getUnames | 2.35 | 0.00 | 2.34 | |
getWellFeatures | 3.38 | 0.00 | 3.45 | |
highlightSegmentation | 0 | 0 | 0 | |
installCellPicker | 1.92 | 0.03 | 2.27 | |
makeCellHTS | 0 | 0 | 0 | |
parseDCF | 0 | 0 | 0 | |
parseImageConf | 1.08 | 0.00 | 1.08 | |
popCellPicker | 0.98 | 0.00 | 0.98 | |
prw2uname | 0 | 0 | 0 | |
readLearnTS | 0 | 0 | 0 | |
segmentATH | 0 | 0 | 0 | |
segmentWells | 4.34 | 0.60 | 4.94 | |
segmentYeastBF | 2.46 | 0.81 | 3.36 | |
summarizeWells | 0.01 | 0.00 | 0.01 | |
zprime | 2.75 | 0.03 | 2.88 | |