Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:55:24 -0400 (Wed, 17 Oct 2018).
Package 547/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
gcatest 1.10.0 Wei Hao
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | ![]() | ||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] | ![]() |
Package: gcatest |
Version: 1.10.0 |
Command: rm -rf gcatest.buildbin-libdir && mkdir gcatest.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh gcatest_1.10.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R gcatest.buildbin-libdir |
StartedAt: 2018-10-17 01:22:00 -0400 (Wed, 17 Oct 2018) |
EndedAt: 2018-10-17 01:22:50 -0400 (Wed, 17 Oct 2018) |
EllapsedTime: 49.8 seconds |
RetCode: 0 |
Status: OK |
PackageFile: gcatest_1.10.0.tgz |
PackageFileSize: 3.323 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf gcatest.buildbin-libdir && mkdir gcatest.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh gcatest_1.10.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R gcatest.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=gcatest.buildbin-libdir gcatest_1.10.0.tar.gz' >>>>>>> * installing *source* package ‘gcatest’ ... ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c assoc.c -o assoc.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c gcatest-init.c -o gcatest-init.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o gcatest.so assoc.o gcatest-init.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.7-bioc/meat/gcatest.buildbin-libdir/gcatest/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (gcatest) >>>>>>> >>>>>>> FIXING LINKS FOR gcatest.buildbin-libdir/gcatest/libs//gcatest.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "gcatest.buildbin-libdir/gcatest/libs//gcatest.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "gcatest.buildbin-libdir/gcatest/libs//gcatest.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "gcatest.buildbin-libdir/gcatest/libs//gcatest.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "gcatest.buildbin-libdir/gcatest/libs//gcatest.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "gcatest.buildbin-libdir/gcatest/libs//gcatest.so" install_name_tool -change "/usr/local/gfortran/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "gcatest.buildbin-libdir/gcatest/libs//gcatest.so" install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "gcatest.buildbin-libdir/gcatest/libs//gcatest.so"