Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:27:39 -0400 (Wed, 17 Oct 2018).
Package 442/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
EMDomics 2.10.0 Sadhika Malladi
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ OK ] | ![]() | ||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | ![]() | ||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | ![]() |
Package: EMDomics |
Version: 2.10.0 |
Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:EMDomics.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings EMDomics_2.10.0.tar.gz |
StartedAt: 2018-10-16 00:07:33 -0400 (Tue, 16 Oct 2018) |
EndedAt: 2018-10-16 00:08:33 -0400 (Tue, 16 Oct 2018) |
EllapsedTime: 60.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: EMDomics.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:EMDomics.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings EMDomics_2.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.7-bioc/meat/EMDomics.Rcheck’ * using R version 3.5.1 Patched (2018-07-12 r74967) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘EMDomics/DESCRIPTION’ ... OK * this is package ‘EMDomics’ version ‘2.10.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘EMDomics’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Authors@R field gives more than one person with maintainer role: Sadhika Malladi <contact@sadhikamalladi.com> [aut, cre] Daniel Schmolze <emd@schmolze.com> [aut, cre] * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .cvm_pairwise_q: no visible global function definition for ‘combn’ .cvm_pairwise_q : <anonymous>: no visible global function definition for ‘median’ .emd_gene_pairwise: no visible global function definition for ‘hist’ .emd_pairwise_q: no visible global function definition for ‘combn’ .emd_pairwise_q : <anonymous>: no visible global function definition for ‘median’ .ks_pairwise_table: no visible global function definition for ‘ks.test’ calculate_cvm: no visible global function definition for ‘combn’ calculate_cvm : <anonymous>: no visible global function definition for ‘median’ calculate_cvm_gene: no visible global function definition for ‘combn’ calculate_emd: no visible global function definition for ‘combn’ calculate_emd : <anonymous>: no visible global function definition for ‘median’ calculate_emd_gene: no visible global function definition for ‘combn’ calculate_ks: no visible global function definition for ‘combn’ calculate_ks : <anonymous>: no visible global function definition for ‘p.adjust’ calculate_ks : <anonymous>: no visible global function definition for ‘median’ calculate_ks_gene: no visible global function definition for ‘combn’ calculate_ks_gene: no visible global function definition for ‘ks.test’ Undefined global functions or variables: combn hist ks.test median p.adjust Consider adding importFrom("graphics", "hist") importFrom("stats", "ks.test", "median", "p.adjust") importFrom("utils", "combn") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed plot_cvm_density 5.656 0.028 5.686 calculate_cvm 5.468 0.068 5.551 plot_cvmperms 5.496 0.020 5.522 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.7-bioc/meat/EMDomics.Rcheck/00check.log’ for details.
EMDomics.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL EMDomics ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’ * installing *source* package ‘EMDomics’ ... ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (EMDomics)
EMDomics.Rcheck/EMDomics-Ex.timings
name | user | system | elapsed | |
calculate_cvm | 5.468 | 0.068 | 5.551 | |
calculate_cvm_gene | 0.008 | 0.000 | 0.007 | |
calculate_emd | 3.212 | 0.036 | 3.250 | |
calculate_emd_gene | 0.008 | 0.000 | 0.005 | |
calculate_ks | 0.812 | 0.012 | 0.825 | |
calculate_ks_gene | 0.012 | 0.000 | 0.010 | |
plot_cvm_density | 5.656 | 0.028 | 5.686 | |
plot_cvmnull | 2.100 | 0.004 | 2.108 | |
plot_cvmperms | 5.496 | 0.020 | 5.522 | |
plot_emd_density | 3.384 | 0.016 | 3.402 | |
plot_emdnull | 1.356 | 0.008 | 1.368 | |
plot_emdperms | 3.220 | 0.020 | 3.248 | |
plot_ks_density | 1.108 | 0.012 | 1.121 | |
plot_ksnull | 0.488 | 0.000 | 0.490 | |
plot_ksperms | 0.900 | 0.008 | 0.909 | |