Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2017-12-05 07:12:56 -0500 (Tue, 05 Dec 2017).
Package 993/1469 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
PAnnBuilder 1.43.0 Li Hong
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | ![]() | ||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | ![]() |
Package: PAnnBuilder |
Version: 1.43.0 |
Command: rm -rf PAnnBuilder.buildbin-libdir PAnnBuilder.Rcheck && mkdir PAnnBuilder.buildbin-libdir PAnnBuilder.Rcheck && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=PAnnBuilder.buildbin-libdir PAnnBuilder_1.43.0.tar.gz >PAnnBuilder.Rcheck\00install.out 2>&1 && cp PAnnBuilder.Rcheck\00install.out PAnnBuilder-install.out && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --library=PAnnBuilder.buildbin-libdir --install="check:PAnnBuilder-install.out" --force-multiarch --no-vignettes --timings PAnnBuilder_1.43.0.tar.gz |
StartedAt: 2017-12-04 20:39:59 -0500 (Mon, 04 Dec 2017) |
EndedAt: 2017-12-04 20:41:49 -0500 (Mon, 04 Dec 2017) |
EllapsedTime: 109.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: PAnnBuilder.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf PAnnBuilder.buildbin-libdir PAnnBuilder.Rcheck && mkdir PAnnBuilder.buildbin-libdir PAnnBuilder.Rcheck && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=PAnnBuilder.buildbin-libdir PAnnBuilder_1.43.0.tar.gz >PAnnBuilder.Rcheck\00install.out 2>&1 && cp PAnnBuilder.Rcheck\00install.out PAnnBuilder-install.out && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --library=PAnnBuilder.buildbin-libdir --install="check:PAnnBuilder-install.out" --force-multiarch --no-vignettes --timings PAnnBuilder_1.43.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/PAnnBuilder.Rcheck' * using R Under development (unstable) (2017-10-30 r73642) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'PAnnBuilder/DESCRIPTION' ... OK * this is package 'PAnnBuilder' version '1.43.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'PAnnBuilder' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Packages listed in more than one of Depends, Imports, Suggests, Enhances: 'methods' 'utils' 'Biobase' 'RSQLite' 'AnnotationDbi' A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to 'Biobase' which was already attached by Depends. Please remove these calls from your code. ':::' calls which should be '::': 'AnnotationDbi:::as.list' 'base:::get' 'tools:::list_files_with_type' See the note in ?`:::` about the use of this operator. Unexported objects imported by ':::' calls: 'AnnotationDbi:::createAnnDbBimaps' 'AnnotationDbi:::prefixAnnObjNames' 'tools:::makeLazyLoadDB' See the note in ?`:::` about the use of this operator. There are ::: calls to the package's namespace in its code. A package almost never needs to use ::: for its own objects: 'getShortSciName' 'twoStepSplit' * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE File 'PAnnBuilder/R/zzz.R': .onLoad calls: require(Biobase) Package startup functions should not change the search path. See section 'Good practice' in '?.onAttach'. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See 'C:/Users/biocbuild/bbs-3.7-bioc/meat/PAnnBuilder.Rcheck/00check.log' for details.
PAnnBuilder.Rcheck/00install.out
install for i386 * installing *source* package 'PAnnBuilder' ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'PAnnBuilder' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'PAnnBuilder' as PAnnBuilder_1.43.0.zip * DONE (PAnnBuilder) In R CMD INSTALL In R CMD INSTALL
PAnnBuilder.Rcheck/examples_i386/PAnnBuilder-Ex.timings
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PAnnBuilder.Rcheck/examples_x64/PAnnBuilder-Ex.timings
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