BioC experimental data: CHECK report for pRolocdata on malbec1
This page was generated on 2017-08-15 15:11:19 -0400 (Tue, 15 Aug 2017).
pRolocdata 1.15.0 Laurent Gatto
Snapshot Date: 2017-08-15 09:00:08 -0400 (Tue, 15 Aug 2017) | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/pRolocdata | Last Changed Rev: 4157 / Revision: 4227 | Last Changed Date: 2017-04-24 16:19:55 -0400 (Mon, 24 Apr 2017) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ WARNINGS ] | |  |
Summary
Package: pRolocdata |
Version: 1.15.0 |
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings pRolocdata_1.15.0.tar.gz |
StartedAt: 2017-08-15 11:00:56 -0400 (Tue, 15 Aug 2017) |
EndedAt: 2017-08-15 11:03:36 -0400 (Tue, 15 Aug 2017) |
EllapsedTime: 159.6 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: pRolocdata.Rcheck |
Warnings: 1 |
Command output
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings pRolocdata_1.15.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.6-data-experiment/meat/pRolocdata.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘pRolocdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘pRolocdata’ version ‘1.15.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘pRolocdata’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 121.7Mb
sub-directories of 1Mb or more:
data 39.3Mb
extdata 82.1Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented data sets:
‘hyperLOPITU2OS2017’ ‘hyperLOPITU2OS2017b’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
andreyev2010 5.612 0.092 6.419
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
‘/home/biocbuild/bbs-3.6-data-experiment/meat/pRolocdata.Rcheck/00check.log’
for details.
pRolocdata.Rcheck/00install.out:
* installing *source* package ‘pRolocdata’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (pRolocdata)
pRolocdata.Rcheck/pRolocdata-Ex.timings:
name | user | system | elapsed
|
E14TG2a | 0.072 | 0.008 | 0.080 |
|
andreyev2010 | 5.612 | 0.092 | 6.419 |
|
andy2011 | 0.056 | 0.004 | 0.060 |
|
at_chloro | 0.576 | 0.008 | 0.585 |
|
dunkley2006 | 0.028 | 0.000 | 0.026 |
|
fabre2015 | 0.272 | 0.012 | 0.283 |
|
foster2006 | 0.032 | 0.000 | 0.034 |
|
groen2014 | 2.556 | 0.000 | 2.555 |
|
hall2009 | 0.224 | 0.000 | 0.224 |
|
havugimana2012 | 0.560 | 0.004 | 0.567 |
|
hyperLOPIT2015 | 4.860 | 0.040 | 4.905 |
|
itzhak2016 | 0.568 | 0.000 | 0.566 |
|
kirkwood2013 | 0.040 | 0.000 | 0.042 |
|
kristensen2012 | 0.464 | 0.000 | 0.464 |
|
lopimsSyn2 | 0.276 | 0.004 | 0.279 |
|
mulvey2015 | 3.632 | 0.000 | 3.650 |
|
nikolovski2012 | 0.440 | 0.000 | 0.437 |
|
nikolovski2014 | 0.360 | 0.004 | 0.363 |
|
pRolocdata | 0.008 | 0.016 | 0.030 |
|
pRolocmetadata | 0.016 | 0.000 | 0.020 |
|
rodriguez2012r1 | 0.452 | 0.020 | 0.473 |
|
stekhoven2014 | 0.344 | 0.020 | 0.362 |
|
tan2009 | 0.020 | 0.000 | 0.017 |
|
trotter2010 | 0.332 | 0.004 | 0.335 |
|