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BioC 3.6: INSTALL report for sva on tokay1

This page was generated on 2017-08-16 13:30:02 -0400 (Wed, 16 Aug 2017).

Package 1316/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sva 3.25.4
Jeffrey T. Leek , John D. Storey
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/sva
Last Changed Rev: 130528 / Revision: 131943
Last Changed Date: 2017-06-19 11:01:04 -0400 (Mon, 19 Jun 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: sva
Version: 3.25.4
Command: rm -rf sva.buildbin-libdir && mkdir sva.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/sva_3.25.4.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=sva.buildbin-libdir --merge-multiarch sva_3.25.4.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL sva_3.25.4.zip && rm sva_3.25.4.tar.gz sva_3.25.4.zip
StartedAt: 2017-08-15 18:25:06 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 18:25:58 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 52.1 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf sva.buildbin-libdir && mkdir sva.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/sva_3.25.4.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=sva.buildbin-libdir --merge-multiarch sva_3.25.4.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL sva_3.25.4.zip  && rm sva_3.25.4.tar.gz sva_3.25.4.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  198k  100  198k    0     0  2771k      0 --:--:-- --:--:-- --:--:-- 2916k

install for i386

* installing *source* package 'sva' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c sva.c -o sva.o
sva.c:30:1: warning: missing braces around initializer [-Wmissing-braces]
 };
 ^
sva.c:30:1: warning: (near initialization for 'callMethods[1]') [-Wmissing-braces]
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o sva.dll tmp.def sva.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/sva.buildbin-libdir/sva/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'sva' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG     -I"C:/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c sva.c -o sva.o
sva.c:30:1: warning: missing braces around initializer [-Wmissing-braces]
 };
 ^
sva.c:30:1: warning: (near initialization for 'callMethods[1]') [-Wmissing-braces]
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o sva.dll tmp.def sva.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/sva.buildbin-libdir/sva/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sva' as sva_3.25.4.zip
* DONE (sva)
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'sva' successfully unpacked and MD5 sums checked