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BioC 3.5: INSTALL report for TCGAbiolinks on tokay2

This page was generated on 2017-10-18 14:25:06 -0400 (Wed, 18 Oct 2017).

Package 1307/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TCGAbiolinks 2.5.9
Antonio Colaprico
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/TCGAbiolinks
Branch: RELEASE_3_5
Last Commit: 3cac966
Last Changed Date: 2017-09-14 20:23:09 -0400 (Thu, 14 Sep 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: TCGAbiolinks
Version: 2.5.9
Command: rm -rf TCGAbiolinks.buildbin-libdir && mkdir TCGAbiolinks.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/TCGAbiolinks_2.5.9.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=TCGAbiolinks.buildbin-libdir --merge-multiarch TCGAbiolinks_2.5.9.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL TCGAbiolinks_2.5.9.zip && rm TCGAbiolinks_2.5.9.tar.gz TCGAbiolinks_2.5.9.zip
StartedAt: 2017-10-17 18:37:39 -0400 (Tue, 17 Oct 2017)
EndedAt: 2017-10-17 18:39:25 -0400 (Tue, 17 Oct 2017)
EllapsedTime: 105.9 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf TCGAbiolinks.buildbin-libdir && mkdir TCGAbiolinks.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/TCGAbiolinks_2.5.9.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=TCGAbiolinks.buildbin-libdir --merge-multiarch TCGAbiolinks_2.5.9.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL TCGAbiolinks_2.5.9.zip  && rm TCGAbiolinks_2.5.9.tar.gz TCGAbiolinks_2.5.9.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 9829k  100 9829k    0     0  90.0M      0 --:--:-- --:--:-- --:--:-- 91.4M

install for i386

* installing *source* package 'TCGAbiolinks' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'TCGAbiolinks' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TCGAbiolinks' as TCGAbiolinks_2.5.9.zip
* DONE (TCGAbiolinks)
* installing to library 'C:/Users/biocbuild/bbs-3.5-bioc/R/library'
package 'TCGAbiolinks' successfully unpacked and MD5 sums checked