BioC 3.5: CHECK report for supraHex on malbec2

Package: supraHex

Version: 1.14.0

Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings supraHex_1.14.0.tar.gz

StartedAt: 2017-08-16 02:33:30 -0400 (Wed, 16 Aug 2017)

EndedAt: 2017-08-16 02:34:12 -0400 (Wed, 16 Aug 2017)

EllapsedTime: 42.0 seconds

RetCode: 0

Status:  OK

CheckDir: supraHex.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings supraHex_1.14.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.5-bioc/meat/supraHex.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘supraHex’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (supraHex)

name	user	system	elapsed
sBMH	0.236	0.000	0.236
sCompReorder	1.040	0.000	1.039
sDistance	0.076	0.000	0.075
sDmat	0.092	0.000	0.089
sDmatCluster	0.184	0.000	0.183
sDmatMinima	0.100	0.004	0.105
sHexDist	0.004	0.000	0.002
sHexGrid	0.000	0.000	0.002
sHexGridVariant	0.000	0.000	0.004
sHexPolygon	0.000	0.000	0.002
sInitial	0.004	0.000	0.002
sMapOverlay	0.368	0.000	0.366
sNeighAny	0.004	0.000	0.005
sNeighDirect	0.004	0.000	0.002
sPipeline	1.288	0.012	1.301
sTopology	0.012	0.000	0.014
sTrainBatch	0.032	0.000	0.031
sTrainSeq	0.272	0.000	0.271
sTrainology	0.004	0.000	0.002
sWriteData	0.220	0.000	0.222
visColoralpha	0.004	0.000	0.005
visColorbar	0.028	0.000	0.031
visColormap	0.004	0.000	0.004
visCompReorder	0.932	0.000	0.934
visDmatCluster	0.212	0.008	0.221
visDmatHeatmap	0.132	0.008	0.143
visHeatmap	0.072	0.000	0.074
visHeatmapAdv	0.856	0.000	0.856
visHexAnimate	0.004	0.000	0.002
visHexBarplot	0.672	0.004	0.676
visHexComp	0.080	0.004	0.081
visHexGrid	0.072	0.000	0.074
visHexMapping	1.000	0.012	1.012
visHexMulComp	0.672	0.008	0.682
visHexPattern	1.524	0.020	1.546
visKernels	0.012	0.000	0.009
visTreeBSclust	0.760	0.004	0.766
visTreeBootstrap	0.668	0.000	0.670
visVp	0.016	0.004	0.020