BioC 3.5: CHECK report for ropls on oaxaca
This page was generated on 2017-03-04 16:50:11 -0500 (Sat, 04 Mar 2017).
ropls 1.7.2 Etienne A. Thevenot
Snapshot Date: 2017-03-03 17:15:47 -0500 (Fri, 03 Mar 2017) | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ropls | Last Changed Rev: 123218 / Revision: 127142 | Last Changed Date: 2016-11-01 04:48:17 -0400 (Tue, 01 Nov 2016) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |  |
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK |  |
toluca2 | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK |  |
oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | [ OK ] | OK | |
Summary
Package: ropls |
Version: 1.7.2 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings ropls_1.7.2.tar.gz |
StartedAt: 2017-03-04 08:28:26 -0800 (Sat, 04 Mar 2017) |
EndedAt: 2017-03-04 08:29:35 -0800 (Sat, 04 Mar 2017) |
EllapsedTime: 68.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ropls.Rcheck |
Warnings: 0 |
Command output
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings ropls_1.7.2.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.5-bioc/meat/ropls.Rcheck’
* using R Under development (unstable) (2017-02-15 r72177)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ropls/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ropls’ version ‘1.7.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ropls’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
ropls.Rcheck/00install.out:
* installing *source* package ‘ropls’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ropls)
ropls.Rcheck/ropls-Ex.timings:
name | user | system | elapsed
|
checkW4M | 0.604 | 0.008 | 0.612 |
|
coef | 2.213 | 0.050 | 2.263 |
|
fitted | 1.117 | 0.035 | 1.151 |
|
fromW4M | 0.241 | 0.001 | 0.242 |
|
getLoadingMN | 0.734 | 0.055 | 0.791 |
|
getPcaVarVn | 0.089 | 0.008 | 0.097 |
|
getScoreMN | 0.950 | 0.065 | 1.017 |
|
getSubsetVi | 0.055 | 0.006 | 0.060 |
|
getSummaryDF | 0.681 | 0.054 | 0.735 |
|
getVipVn | 0.741 | 0.056 | 0.797 |
|
getWeightMN | 0.877 | 0.063 | 0.940 |
|
opls-class | 2.476 | 0.116 | 2.594 |
|
opls | 1.992 | 0.107 | 2.098 |
|
plot | 0.816 | 0.076 | 0.892 |
|
predict | 0.058 | 0.006 | 0.064 |
|
print | 0.695 | 0.050 | 0.744 |
|
residuals | 0.689 | 0.024 | 0.714 |
|
ropls-package | 1.505 | 0.089 | 1.593 |
|
show | 0.592 | 0.053 | 0.646 |
|
strF | 0.157 | 0.004 | 0.160 |
|
tested | 0.061 | 0.006 | 0.066 |
|
toW4M | 0.224 | 0.004 | 0.228 |
|