BioC 3.5: CHECK report for pepXMLTab on tokay2

Package: pepXMLTab

Version: 1.10.0

Command: rm -rf pepXMLTab.buildbin-libdir pepXMLTab.Rcheck && mkdir pepXMLTab.buildbin-libdir pepXMLTab.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=pepXMLTab.buildbin-libdir pepXMLTab_1.10.0.tar.gz >pepXMLTab.Rcheck\00install.out 2>&1 && cp pepXMLTab.Rcheck\00install.out pepXMLTab-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=pepXMLTab.buildbin-libdir --install="check:pepXMLTab-install.out" --force-multiarch --no-vignettes --timings pepXMLTab_1.10.0.tar.gz

StartedAt: 2017-08-16 01:53:30 -0400 (Wed, 16 Aug 2017)

EndedAt: 2017-08-16 01:54:12 -0400 (Wed, 16 Aug 2017)

EllapsedTime: 42.7 seconds

RetCode: 0

Status:  OK

CheckDir: pepXMLTab.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf pepXMLTab.buildbin-libdir pepXMLTab.Rcheck && mkdir pepXMLTab.buildbin-libdir pepXMLTab.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=pepXMLTab.buildbin-libdir pepXMLTab_1.10.0.tar.gz >pepXMLTab.Rcheck\00install.out 2>&1 && cp pepXMLTab.Rcheck\00install.out pepXMLTab-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=pepXMLTab.buildbin-libdir --install="check:pepXMLTab-install.out" --force-multiarch --no-vignettes --timings pepXMLTab_1.10.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/pepXMLTab.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'pepXMLTab/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'pepXMLTab' version '1.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'pepXMLTab' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.5-bioc/meat/pepXMLTab.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'pepXMLTab' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'pepXMLTab' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'pepXMLTab' as pepXMLTab_1.10.0.zip
* DONE (pepXMLTab)

name	user	system	elapsed
PSMfilter	0.3	0.0	0.3
pepXML2tab	0.95	0.00	0.95

name	user	system	elapsed
PSMfilter	0.35	0.02	0.37
pepXML2tab	1.11	0.00	1.16