BioC 3.5: BUILD report for mzR on tokay2

Package: mzR

Version: 2.10.0

Command: chmod a+r mzR -R && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data mzR

StartedAt: 2017-08-15 19:31:07 -0400 (Tue, 15 Aug 2017)

EndedAt: 2017-08-15 19:57:11 -0400 (Tue, 15 Aug 2017)

EllapsedTime: 1564.6 seconds

RetCode: 0

Status:  OK

PackageFile: mzR_2.10.0.tar.gz

PackageFileSize: 8.381 MiB

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### Running command:
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###   chmod a+r mzR -R && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data mzR
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* checking for file 'mzR/DESCRIPTION' ... OK
* preparing 'mzR':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... OK
* cleaning src
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
WARNING: directory 'mzR/inst/extdata' is empty
WARNING: directory 'mzR/inst/scripts' is empty
WARNING: directory 'mzR/src/boost/accumulators/framework/accumulators' is empty
WARNING: directory 'mzR/src/boost/accumulators/framework/parameters' is empty
WARNING: directory 'mzR/src/boost/accumulators/numeric/detail' is empty
WARNING: directory 'mzR/src/boost/accumulators/numeric/functional' is empty
WARNING: directory 'mzR/src/boost/accumulators/statistics' is empty
WARNING: directory 'mzR/src/boost/algorithm/cxx11' is empty
WARNING: directory 'mzR/src/boost/algorithm/cxx14' is empty
WARNING: directory 'mzR/src/boost/algorithm/searching/detail' is empty
WARNING: directory 'mzR/src/boost/algorithm/string/detail' is empty
WARNING: directory 'mzR/src/boost/algorithm/string/std' is empty
WARNING: directory 'mzR/src/boost/align/detail' is empty
WARNING: directory 'mzR/src/boost/archive/detail' is empty
WARNING: directory 'mzR/src/boost/archive/impl' is empty
WARNING: directory 'mzR/src/boost/archive/iterators' is empty
WARNING: directory 'mzR/src/boost/asio/detail/impl' is empty
WARNING: directory 'mzR/src/boost/asio/generic/detail/impl' is empty
WARNING: directory 'mzR/src/boost/asio/impl' is empty
WARNING: directory 'mzR/src/boost/asio/ip/detail/impl' is empty
WARNING: directory 'mzR/src/boost/asio/ip/impl' is empty
WARNING: directory 'mzR/src/boost/asio/local/detail/impl' is empty
WARNING: directory 'mzR/src/boost/asio/posix' is empty
WARNING: directory 'mzR/src/boost/asio/windows' is empty
WARNING: directory 'mzR/src/boost/assign/std' is empty
WARNING: directory 'mzR/src/boost/atomic/detail' is empty
WARNING: directory 'mzR/src/boost/bind' is empty
WARNING: directory 'mzR/src/boost/chrono/detail/inlined/mac' is empty
WARNING: directory 'mzR/src/boost/chrono/detail/inlined/posix' is empty
WARNING: directory 'mzR/src/boost/chrono/detail/inlined/win' is empty
WARNING: directory 'mzR/src/boost/chrono/detail/no_warning' is empty
WARNING: directory 'mzR/src/boost/chrono/io/utility' is empty
WARNING: directory 'mzR/src/boost/chrono/io_v1' is empty
WARNING: directory 'mzR/src/boost/chrono/src' is empty
WARNING: directory 'mzR/src/boost/chrono/typeof/boost/chrono' is empty
WARNING: directory 'mzR/src/boost/compatibility/cpp_c_headers' is empty
WARNING: directory 'mzR/src/boost/concept/detail' is empty
WARNING: directory 'mzR/src/boost/config/abi' is empty
WARNING: directory 'mzR/src/boost/config/compiler' is empty
WARNING: directory 'mzR/src/boost/config/no_tr1' is empty
WARNING: directory 'mzR/src/boost/config/platform' is empty
WARNING: directory 'mzR/src/boost/config/stdlib' is empty
WARNING: directory 'mzR/src/boost/container/detail' is empty
WARNING: directory 'mzR/src/boost/core' is empty
WARNING: directory 'mzR/src/boost/date_time/gregorian' is empty
WARNING: directory 'mzR/src/boost/date_time/local_time' is empty
WARNING: directory 'mzR/src/boost/date_time/posix_time' is empty
WARNING: directory 'mzR/src/boost/detail/winapi' is empty
WARNING: directory 'mzR/src/boost/dynamic_bitset' is empty
WARNING: directory 'mzR/src/boost/endian/detail' is empty
WARNING: directory 'mzR/src/boost/exception/detail' is empty
WARNING: directory 'mzR/src/boost/filesystem/detail' is empty
WARNING: directory 'mzR/src/boost/filesystem/src' is empty
WARNING: directory 'mzR/src/boost/format/detail' is empty
WARNING: directory 'mzR/src/boost/function/detail' is empty
WARNING: directory 'mzR/src/boost/function_types/config' is empty
WARNING: directory 'mzR/src/boost/function_types/detail/classifier_impl' is empty
WARNING: directory 'mzR/src/boost/function_types/detail/components_impl' is empty
WARNING: directory 'mzR/src/boost/function_types/detail/encoding' is empty
WARNING: directory 'mzR/src/boost/function_types/detail/pp_cc_loop' is empty
WARNING: directory 'mzR/src/boost/function_types/detail/pp_retag_default_cc' is empty
WARNING: directory 'mzR/src/boost/function_types/detail/pp_tags' is empty
WARNING: directory 'mzR/src/boost/function_types/detail/pp_variate_loop' is empty
WARNING: directory 'mzR/src/boost/function_types/detail/synthesize_impl' is empty
WARNING: directory 'mzR/src/boost/functional/detail' is empty
WARNING: directory 'mzR/src/boost/functional/hash/detail' is empty
WARNING: directory 'mzR/src/boost/functional/overloaded_function/detail' is empty
WARNING: directory 'mzR/src/boost/fusion/adapted/adt/detail' is empty
WARNING: directory 'mzR/src/boost/fusion/adapted/array' is empty
WARNING: directory 'mzR/src/boost/fusion/adapted/boost_array/detail' is empty
WARNING: directory 'mzR/src/boost/fusion/adapted/boost_tuple/detail' is empty
WARNING: directory 'mzR/src/boost/fusion/adapted/boost_tuple/mpl' is empty
WARNING: directory 'mzR/src/boost/fusion/adapted/class/detail' is empty
WARNING: directory 'mzR/src/boost/fusion/adapted/mpl/detail' is empty
WARNING: directory 'mzR/src/boost/fusion/adapted/std_tuple/detail' is empty
WARNING: directory 'mzR/src/boost/fusion/adapted/std_tuple/mpl' is empty
WARNING: directory 'mzR/src/boost/fusion/adapted/struct/detail/preprocessor' is empty
WARNING: directory 'mzR/src/boost/fusion/algorithm/auxiliary' is empty
WARNING: directory 'mzR/src/boost/fusion/algorithm/iteration/detail/preprocessed' is empty
WARNING: directory 'mzR/src/boost/fusion/algorithm/iteration/ext_' is empty
WARNING: directory 'mzR/src/boost/fusion/algorithm/query/detail' is empty
WARNING: directory 'mzR/src/boost/fusion/algorithm/query/ext_' is empty
WARNING: directory 'mzR/src/boost/fusion/algorithm/transformation/detail/preprocessed' is empty
WARNING: directory 'mzR/src/boost/fusion/container/deque/detail/cpp03/preprocessed' is empty
WARNING: directory 'mzR/src/boost/fusion/container/ext_' is empty
WARNING: directory 'mzR/src/boost/fusion/container/generation/detail/preprocessed' is empty
WARNING: directory 'mzR/src/boost/fusion/container/list/detail/cpp03/preprocessed' is empty
WARNING: directory 'mzR/src/boost/fusion/container/list/detail/preprocessed' is empty
WARNING: directory 'mzR/src/boost/fusion/container/map/detail/cpp03/preprocessed' is empty
WARNING: directory 'mzR/src/boost/fusion/container/set/detail/cpp03/preprocessed' is empty
WARNING: directory 'mzR/src/boost/fusion/container/set/detail/preprocessed' is empty
WARNING: directory 'mzR/src/boost/fusion/container/vector/detail/cpp03/preprocessed' is empty
WARNING: directory 'mzR/src/boost/fusion/container/vector/detail/preprocessed' is empty
WARNING: directory 'mzR/src/boost/fusion/functional/adapter/detail' is empty
WARNING: directory 'mzR/src/boost/fusion/functional/generation/detail' is empty
WARNING: directory 'mzR/src/boost/fusion/functional/invocation/detail' is empty
WARNING: directory 'mzR/src/boost/fusion/include' is empty
WARNING: directory 'mzR/src/boost/fusion/iterator/detail' is empty
WARNING: directory 'mzR/src/boost/fusion/iterator/mpl' is empty
WARNING: directory 'mzR/src/boost/fusion/mpl/detail' is empty
WARNING: directory 'mzR/src/boost/fusion/sequence/comparison/detail' is empty
WARNING: directory 'mzR/src/boost/fusion/sequence/intrinsic/detail' is empty
WARNING: directory 'mzR/src/boost/fusion/sequence/intrinsic/ext_' is empty
WARNING: directory 'mzR/src/boost/fusion/sequence/io/detail' is empty
WARNING: directory 'mzR/src/boost/fusion/support/detail' is empty
WARNING: directory 'mzR/src/boost/fusion/support/ext_' is empty
WARNING: directory 'mzR/src/boost/fusion/tuple/detail/preprocessed' is empty
WARNING: directory 'mzR/src/boost/fusion/view/detail' is empty
WARNING: directory 'mzR/src/boost/fusion/view/ext_' is empty
WARNING: directory 'mzR/src/boost/fusion/view/filter_view/detail' is empty
WARNING: directory 'mzR/src/boost/fusion/view/flatten_view' is empty
WARNING: directory 'mzR/src/boost/fusion/view/iterator_range/detail' is empty
WARNING: directory 'mzR/src/boost/fusion/view/joint_view/detail' is empty
WARNING: directory 'mzR/src/boost/fusion/view/nview/detail/cpp03' is empty
WARNING: directory 'mzR/src/boost/fusion/view/repetitive_view/detail' is empty
WARNING: directory 'mzR/src/boost/fusion/view/reverse_view/detail' is empty
WARNING: directory 'mzR/src/boost/fusion/view/single_view/detail' is empty
WARNING: directory 'mzR/src/boost/fusion/view/transform_view/detail' is empty
WARNING: directory 'mzR/src/boost/fusion/view/zip_view/detail' is empty
WARNING: directory 'mzR/src/boost/graph/detail' is empty
WARNING: directory 'mzR/src/boost/graph/distributed/detail' is empty
WARNING: directory 'mzR/src/boost/graph/parallel/detail' is empty
WARNING: directory 'mzR/src/boost/graph/property_maps' is empty
WARNING: directory 'mzR/src/boost/integer' is empty
WARNING: directory 'mzR/src/boost/interprocess/allocators/detail' is empty
WARNING: directory 'mzR/src/boost/interprocess/containers' is empty
WARNING: directory 'mzR/src/boost/interprocess/detail' is empty
WARNING: directory 'mzR/src/boost/interprocess/indexes' is empty
WARNING: directory 'mzR/src/boost/interprocess/mem_algo/detail' is empty
WARNING: directory 'mzR/src/boost/interprocess/smart_ptr' is empty
WARNING: directory 'mzR/src/boost/interprocess/streams' is empty
WARNING: directory 'mzR/src/boost/interprocess/sync/detail' is empty
WARNING: directory 'mzR/src/boost/interprocess/sync/posix' is empty
WARNING: directory 'mzR/src/boost/interprocess/sync/shm' is empty
WARNING: directory 'mzR/src/boost/interprocess/sync/spin' is empty
WARNING: directory 'mzR/src/boost/interprocess/sync/windows' is empty
WARNING: directory 'mzR/src/boost/intrusive/detail' is empty
WARNING: directory 'mzR/src/boost/io/detail' is empty
WARNING: directory 'mzR/src/boost/iostreams/detail/adapter' is empty
WARNING: directory 'mzR/src/boost/iostreams/detail/broken_overload_resolution' is empty
WARNING: directory 'mzR/src/boost/iostreams/detail/config' is empty
WARNING: directory 'mzR/src/boost/iostreams/detail/streambuf' is empty
WARNING: directory 'mzR/src/boost/iostreams/detail/vc6' is empty
WARNING: directory 'mzR/src/boost/iostreams/device' is empty
WARNING: directory 'mzR/src/boost/iostreams/filter' is empty
WARNING: directory 'mzR/src/boost/iostreams/src' is empty
WARNING: directory 'mzR/src/boost/iterator/detail' is empty
WARNING: directory 'mzR/src/boost/lambda/detail' is empty
WARNING: directory 'mzR/src/boost/lexical_cast/detail' is empty
WARNING: directory 'mzR/src/boost/locale/boundary' is empty
WARNING: directory 'mzR/src/boost/logic' is empty
WARNING: directory 'mzR/src/boost/math/bindings/detail' is empty
WARNING: directory 'mzR/src/boost/math/complex' is empty
WARNING: directory 'mzR/src/boost/math/concepts' is empty
WARNING: directory 'mzR/src/boost/math/constants' is empty
WARNING: directory 'mzR/src/boost/math/cstdfloat' is empty
WARNING: directory 'mzR/src/boost/math/distributions/detail' is empty
WARNING: directory 'mzR/src/boost/math/policies' is empty
WARNING: directory 'mzR/src/boost/math/special_functions/detail' is empty
WARNING: directory 'mzR/src/boost/math/tools/detail' is empty
WARNING: directory 'mzR/src/boost/move/detail' is empty
WARNING: directory 'mzR/src/boost/mpi/collectives' is empty
WARNING: directory 'mzR/src/boost/mpi/detail' is empty
WARNING: directory 'mzR/src/boost/mpi/python' is empty
WARNING: directory 'mzR/src/boost/mpl/aux_/config' is empty
WARNING: directory 'mzR/src/boost/mpl/aux_/preprocessed/bcc' is empty
WARNING: directory 'mzR/src/boost/mpl/aux_/preprocessed/bcc551' is empty
WARNING: directory 'mzR/src/boost/mpl/aux_/preprocessed/bcc_pre590' is empty
WARNING: directory 'mzR/src/boost/mpl/aux_/preprocessed/dmc' is empty
WARNING: directory 'mzR/src/boost/mpl/aux_/preprocessed/gcc' is empty
WARNING: directory 'mzR/src/boost/mpl/aux_/preprocessed/msvc60' is empty
WARNING: directory 'mzR/src/boost/mpl/aux_/preprocessed/msvc70' is empty
WARNING: directory 'mzR/src/boost/mpl/aux_/preprocessed/mwcw' is empty
WARNING: directory 'mzR/src/boost/mpl/aux_/preprocessed/no_ctps' is empty
WARNING: directory 'mzR/src/boost/mpl/aux_/preprocessed/no_ttp' is empty
WARNING: directory 'mzR/src/boost/mpl/aux_/preprocessed/plain' is empty
WARNING: directory 'mzR/src/boost/mpl/aux_/preprocessor' is empty
WARNING: directory 'mzR/src/boost/mpl/aux_/range_c' is empty
WARNING: directory 'mzR/src/boost/mpl/aux_/test' is empty
WARNING: directory 'mzR/src/boost/mpl/limits' is empty
WARNING: directory 'mzR/src/boost/mpl/list/aux_/preprocessed/plain' is empty
WARNING: directory 'mzR/src/boost/mpl/map/aux_/preprocessed/no_ctps' is empty
WARNING: directory 'mzR/src/boost/mpl/map/aux_/preprocessed/plain' is empty
WARNING: directory 'mzR/src/boost/mpl/map/aux_/preprocessed/typeof_based' is empty
WARNING: directory 'mzR/src/boost/mpl/math' is empty
WARNING: directory 'mzR/src/boost/mpl/multiset/aux_' is empty
WARNING: directory 'mzR/src/boost/mpl/set/aux_/preprocessed/plain' is empty
WARNING: directory 'mzR/src/boost/mpl/vector/aux_/preprocessed/no_ctps' is empty
WARNING: directory 'mzR/src/boost/mpl/vector/aux_/preprocessed/plain' is empty
WARNING: directory 'mzR/src/boost/mpl/vector/aux_/preprocessed/typeof_based' is empty
WARNING: directory 'mzR/src/boost/multi_array' is empty
WARNING: directory 'mzR/src/boost/multi_index/detail' is empty
WARNING: directory 'mzR/src/boost/multiprecision/cpp_bin_float' is empty
WARNING: directory 'mzR/src/boost/multiprecision/cpp_int' is empty
WARNING: directory 'mzR/src/boost/multiprecision/detail/functions' is empty
WARNING: directory 'mzR/src/boost/multiprecision/traits' is empty
WARNING: directory 'mzR/src/boost/numeric/conversion/detail/preprocessed' is empty
WARNING: directory 'mzR/src/boost/numeric/interval/compare' is empty
WARNING: directory 'mzR/src/boost/numeric/interval/detail' is empty
WARNING: directory 'mzR/src/boost/numeric/interval/ext' is empty
WARNING: directory 'mzR/src/boost/numeric/odeint/algebra/detail' is empty
WARNING: directory 'mzR/src/boost/numeric/odeint/external/blaze' is empty
WARNING: directory 'mzR/src/boost/numeric/odeint/external/compute' is empty
WARNING: directory 'mzR/src/boost/numeric/odeint/external/eigen' is empty
WARNING: directory 'mzR/src/boost/numeric/odeint/external/gsl' is empty
WARNING: directory 'mzR/src/boost/numeric/odeint/external/mkl' is empty
WARNING: directory 'mzR/src/boost/numeric/odeint/external/mpi' is empty
WARNING: directory 'mzR/src/boost/numeric/odeint/external/mtl4' is empty
WARNING: directory 'mzR/src/boost/numeric/odeint/external/nt2' is empty
WARNING: directory 'mzR/src/boost/numeric/odeint/external/openmp' is empty
WARNING: directory 'mzR/src/boost/numeric/odeint/external/thrust' is empty
WARNING: directory 'mzR/src/boost/numeric/odeint/external/vexcl' is empty
WARNING: directory 'mzR/src/boost/numeric/odeint/external/viennacl' is empty
WARNING: directory 'mzR/src/boost/numeric/odeint/integrate/detail' is empty
WARNING: directory 'mzR/src/boost/numeric/odeint/iterator/detail' is empty
WARNING: directory 'mzR/src/boost/numeric/odeint/iterator/impl' is empty
WARNING: directory 'mzR/src/boost/numeric/odeint/iterator/integrate/detail' is empty
WARNING: directory 'mzR/src/boost/numeric/odeint/stepper/base' is empty
WARNING: directory 'mzR/src/boost/numeric/odeint/stepper/detail' is empty
WARNING: directory 'mzR/src/boost/numeric/odeint/stepper/generation' is empty
WARNING: directory 'mzR/src/boost/numeric/odeint/util/detail' is empty
WARNING: directory 'mzR/src/boost/numeric/ublas/detail' is empty
WARNING: directory 'mzR/src/boost/numeric/ublas/experimental' is empty
WARNING: directory 'mzR/src/boost/numeric/ublas/operation' is empty
WARNING: directory 'mzR/src/boost/numeric/ublas/traits' is empty
WARNING: directory 'mzR/src/boost/optional' is empty
WARNING: directory 'mzR/src/boost/parameter/aux_' is empty
WARNING: directory 'mzR/src/boost/pending/detail' is empty
WARNING: directory 'mzR/src/boost/phoenix/bind/detail/preprocessed' is empty
WARNING: directory 'mzR/src/boost/phoenix/bind/preprocessed' is empty
WARNING: directory 'mzR/src/boost/phoenix/core/detail/preprocessed' is empty
WARNING: directory 'mzR/src/boost/phoenix/core/preprocessed' is empty
WARNING: directory 'mzR/src/boost/phoenix/function/detail/preprocessed' is empty
WARNING: directory 'mzR/src/boost/phoenix/fusion' is empty
WARNING: directory 'mzR/src/boost/phoenix/object/detail/preprocessed' is empty
WARNING: directory 'mzR/src/boost/phoenix/operator/detail/preprocessed' is empty
WARNING: directory 'mzR/src/boost/phoenix/operator/preprocessed' is empty
WARNING: directory 'mzR/src/boost/phoenix/scope/detail' is empty
WARNING: directory 'mzR/src/boost/phoenix/scope/preprocessed' is empty
WARNING: directory 'mzR/src/boost/phoenix/statement/detail/preprocessed' is empty
WARNING: directory 'mzR/src/boost/phoenix/stl/algorithm/detail' is empty
WARNING: directory 'mzR/src/boost/phoenix/stl/container/detail' is empty
WARNING: directory 'mzR/src/boost/phoenix/support/detail' is empty
WARNING: directory 'mzR/src/boost/phoenix/support/preprocessed' is empty
WARNING: directory 'mzR/src/boost/phoenix/support/preprocessor' is empty
WARNING: directory 'mzR/src/boost/pool/detail' is empty
WARNING: directory 'mzR/src/boost/predef/architecture/x86' is empty
WARNING: directory 'mzR/src/boost/predef/compiler' is empty
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WARNING: directory 'mzR/src/boost/predef/library/c' is empty
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WARNING: directory 'mzR/src/boost/predef/os/bsd' is empty
WARNING: directory 'mzR/src/boost/predef/other' is empty
WARNING: directory 'mzR/src/boost/predef/platform' is empty
WARNING: directory 'mzR/src/boost/preprocessor/arithmetic/detail' is empty
WARNING: directory 'mzR/src/boost/preprocessor/array/detail' is empty
WARNING: directory 'mzR/src/boost/preprocessor/comparison' is empty
WARNING: directory 'mzR/src/boost/preprocessor/config' is empty
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WARNING: directory 'mzR/src/boost/preprocessor/detail/dmc' is empty
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WARNING: directory 'mzR/src/boost/preprocessor/iteration/detail/bounds' is empty
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WARNING: directory 'mzR/src/boost/preprocessor/list/detail/dmc' is empty
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WARNING: directory 'mzR/src/boost/ratio/detail/mpl' is empty
WARNING: directory 'mzR/src/boost/ratio/mpl' is empty
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WARNING: directory 'mzR/src/boost/regex/src' is empty
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WARNING: directory 'mzR/src/boost/signals/detail' is empty
WARNING: directory 'mzR/src/boost/smart_ptr/detail' is empty
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* building 'mzR_2.10.0.tar.gz'
Warning: file 'mzR/cleanup' did not have execute permissions: corrected
Warning: file 'mzR/configure' did not have execute permissions: corrected