Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L [M] N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.5: BUILD BIN report for multtest on oaxaca

This page was generated on 2017-03-04 16:33:42 -0500 (Sat, 04 Mar 2017).

Package 840/1339HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
multtest 2.31.0
Katherine S. Pollard
Snapshot Date: 2017-03-03 17:15:47 -0500 (Fri, 03 Mar 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/multtest
Last Changed Rev: 122712 / Revision: 127142
Last Changed Date: 2016-10-17 15:10:43 -0400 (Mon, 17 Oct 2016)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
toluca2 Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS [ OK ]

Summary

Package: multtest
Version: 2.31.0
Command: rm -rf multtest.buildbin-libdir && mkdir multtest.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh multtest_2.31.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R multtest.buildbin-libdir
StartedAt: 2017-03-04 11:54:09 -0800 (Sat, 04 Mar 2017)
EndedAt: 2017-03-04 11:54:27 -0800 (Sat, 04 Mar 2017)
EllapsedTime: 17.9 seconds
RetCode: 0
Status:  OK 
PackageFile: multtest_2.31.0.tgz
PackageFileSize: 640 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf multtest.buildbin-libdir && mkdir multtest.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh multtest_2.31.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R multtest.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=multtest.buildbin-libdir multtest_2.31.0.tar.gz'
>>>>>>> 

* installing *source* package ‘multtest’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include  -DUSEDOUBLE -fPIC  -Wall -mtune=core2 -g -O2  -c Rpack.c -o Rpack.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include  -DUSEDOUBLE -fPIC  -Wall -mtune=core2 -g -O2  -c VScount.c -o VScount.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include  -DUSEDOUBLE -fPIC  -Wall -mtune=core2 -g -O2  -c block_sampling_fixed.c -o block_sampling_fixed.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include  -DUSEDOUBLE -fPIC  -Wall -mtune=core2 -g -O2  -c bootloop.c -o bootloop.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include  -DUSEDOUBLE -fPIC  -Wall -mtune=core2 -g -O2  -c mt.c -o mt.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include  -DUSEDOUBLE -fPIC  -Wall -mtune=core2 -g -O2  -c pairt_sampling.c -o pairt_sampling.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include  -DUSEDOUBLE -fPIC  -Wall -mtune=core2 -g -O2  -c pairt_sampling_fixed.c -o pairt_sampling_fixed.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include  -DUSEDOUBLE -fPIC  -Wall -mtune=core2 -g -O2  -c random.c -o random.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include  -DUSEDOUBLE -fPIC  -Wall -mtune=core2 -g -O2  -c sampling.c -o sampling.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include  -DUSEDOUBLE -fPIC  -Wall -mtune=core2 -g -O2  -c sampling_fixed.c -o sampling_fixed.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include  -DUSEDOUBLE -fPIC  -Wall -mtune=core2 -g -O2  -c stat_func.c -o stat_func.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include  -DUSEDOUBLE -fPIC  -Wall -mtune=core2 -g -O2  -c stat_order.c -o stat_order.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o multtest.so Rpack.o VScount.o block_sampling_fixed.o bootloop.o mt.o pairt_sampling.o pairt_sampling_fixed.o random.o sampling.o sampling_fixed.o stat_func.o stat_order.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.5-bioc/meat/multtest.buildbin-libdir/multtest/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (multtest)


>>>>>>> 
>>>>>>> FIXING LINKS FOR multtest.buildbin-libdir/multtest/libs//multtest.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "multtest.buildbin-libdir/multtest/libs//multtest.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "multtest.buildbin-libdir/multtest/libs//multtest.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "multtest.buildbin-libdir/multtest/libs//multtest.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "multtest.buildbin-libdir/multtest/libs//multtest.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "multtest.buildbin-libdir/multtest/libs//multtest.so"