BioC 3.5: CHECK report for mogsa on tokay2

Package: mogsa

Version: 1.10.0

Command: rm -rf mogsa.buildbin-libdir mogsa.Rcheck && mkdir mogsa.buildbin-libdir mogsa.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=mogsa.buildbin-libdir mogsa_1.10.0.tar.gz >mogsa.Rcheck\00install.out 2>&1 && cp mogsa.Rcheck\00install.out mogsa-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=mogsa.buildbin-libdir --install="check:mogsa-install.out" --force-multiarch --no-vignettes --timings mogsa_1.10.0.tar.gz

StartedAt: 2017-08-16 01:22:16 -0400 (Wed, 16 Aug 2017)

EndedAt: 2017-08-16 01:26:02 -0400 (Wed, 16 Aug 2017)

EllapsedTime: 225.5 seconds

RetCode: 0

Status:  OK

CheckDir: mogsa.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf mogsa.buildbin-libdir mogsa.Rcheck && mkdir mogsa.buildbin-libdir mogsa.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=mogsa.buildbin-libdir mogsa_1.10.0.tar.gz >mogsa.Rcheck\00install.out 2>&1 && cp mogsa.Rcheck\00install.out mogsa-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=mogsa.buildbin-libdir --install="check:mogsa-install.out" --force-multiarch --no-vignettes --timings mogsa_1.10.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/mogsa.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'mogsa/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'mogsa' version '1.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'mogsa' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'mogsa' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'mogsa' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'mogsa' as mogsa_1.10.0.zip
* DONE (mogsa)

name	user	system	elapsed
GIS	0.82	0.03	0.85
annotate.gs	0.26	0.02	0.28
bootMbpca	0	0	0
box.gs.feature	0.45	0.00	0.45
combine-methods	0.45	0.01	0.47
decompose.gs.group	0.68	0.05	0.72
decompose.gs.ind	0.11	0.00	0.11
distMoa	0.32	0.00	0.32
getmgsa	0.39	0.00	0.39
matpower	0.02	0.00	0.02
mbpca	2.95	0.00	2.95
mgsa-class	0.49	0.02	0.50
moGap	1.12	0.00	1.13
moa-class	0.11	0.00	0.11
moa	0.17	0.00	0.17
moa.sup-class	0.38	0.00	0.37
moaCoef	0.3	0.0	0.3
moaScore	0.28	0.01	0.29
mogsa-package	0.22	0.03	0.25
mogsa	0.49	0.00	0.49
pairwise.rv	0.01	0.00	0.01
plotGS	0.36	0.00	0.36
prepGraphite	0.14	0.00	0.83
prepMsigDB	0	0	0
prepSupMoa	1.54	0.07	1.61
softK	0	0	0
sup.moa	0.28	0.01	0.30
wsvd	0.02	0.00	0.01

name	user	system	elapsed
GIS	0.84	0.00	0.84
annotate.gs	0.3	0.0	0.3
bootMbpca	0	0	0
box.gs.feature	0.60	0.00	0.59
combine-methods	0.21	0.04	0.25
decompose.gs.group	1.05	0.01	1.07
decompose.gs.ind	0.17	0.05	0.22
distMoa	0.83	0.03	0.86
getmgsa	0.12	0.00	0.12
matpower	0	0	0
mbpca	3.96	0.08	4.03
mgsa-class	0.21	0.00	0.22
moGap	1.63	0.01	1.64
moa-class	0.14	0.00	0.14
moa	0.2	0.0	0.2
moa.sup-class	0.47	0.02	0.49
moaCoef	0.27	0.00	0.26
moaScore	0.25	0.00	0.25
mogsa-package	0.23	0.00	0.24
mogsa	0.55	0.00	0.55
pairwise.rv	0.01	0.00	0.01
plotGS	0.13	0.01	0.14
prepGraphite	0.37	0.02	0.39
prepMsigDB	0	0	0
prepSupMoa	1.61	0.06	1.67
softK	0	0	0
sup.moa	0.31	0.00	0.31
wsvd	0	0	0