BioC 3.5: CHECK report for microRNA on tokay2

Package: microRNA

Version: 1.34.0

Command: rm -rf microRNA.buildbin-libdir microRNA.Rcheck && mkdir microRNA.buildbin-libdir microRNA.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=microRNA.buildbin-libdir microRNA_1.34.0.tar.gz >microRNA.Rcheck\00install.out 2>&1 && cp microRNA.Rcheck\00install.out microRNA-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=microRNA.buildbin-libdir --install="check:microRNA-install.out" --force-multiarch --no-vignettes --timings microRNA_1.34.0.tar.gz

StartedAt: 2017-08-16 01:14:19 -0400 (Wed, 16 Aug 2017)

EndedAt: 2017-08-16 01:16:13 -0400 (Wed, 16 Aug 2017)

EllapsedTime: 114.1 seconds

RetCode: 0

Status:  OK

CheckDir: microRNA.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf microRNA.buildbin-libdir microRNA.Rcheck && mkdir microRNA.buildbin-libdir microRNA.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=microRNA.buildbin-libdir microRNA_1.34.0.tar.gz >microRNA.Rcheck\00install.out 2>&1 && cp microRNA.Rcheck\00install.out microRNA-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=microRNA.buildbin-libdir --install="check:microRNA-install.out" --force-multiarch --no-vignettes --timings microRNA_1.34.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/microRNA.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'microRNA/DESCRIPTION' ... OK
* this is package 'microRNA' version '1.34.0'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package which this enhances but not available for checking: 'Rlibstree'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'microRNA' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  7.4Mb
  sub-directories of 1Mb or more:
    data      5.4Mb
    extdata   2.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'Biostrings'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
           user system elapsed
matchSeeds  5.5   0.02    5.52
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'C:/Users/biocbuild/bbs-3.5-bioc/meat/microRNA.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'microRNA' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'microRNA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'microRNA' as microRNA_1.34.0.zip
* DONE (microRNA)

name	user	system	elapsed
RNA2DNA	0	0	0
get_selfhyb_subseq	0	0	0
hsSeqs	0.00	0.02	0.01
hsTargets	0.68	0.03	0.72
matchSeeds	5.50	0.02	5.52
mmSeqs	0	0	0
mmTargets	1.88	0.04	1.92
s3utr	0.01	0.00	0.02
seedRegions	0	0	0

name	user	system	elapsed
RNA2DNA	0	0	0
get_selfhyb_subseq	0	0	0
hsSeqs	0.01	0.00	0.01
hsTargets	0.69	0.00	0.69
matchSeeds	3.69	0.09	3.78
mmSeqs	0.00	0.02	0.02
mmTargets	1.86	0.05	1.90
s3utr	0	0	0
seedRegions	0.01	0.00	0.02