BioC 3.5: CHECK report for metavizr on tokay2

Package: metavizr

Version: 1.0.2

Command: rm -rf metavizr.buildbin-libdir metavizr.Rcheck && mkdir metavizr.buildbin-libdir metavizr.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=metavizr.buildbin-libdir metavizr_1.0.2.tar.gz >metavizr.Rcheck\00install.out 2>&1 && cp metavizr.Rcheck\00install.out metavizr-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=metavizr.buildbin-libdir --install="check:metavizr-install.out" --force-multiarch --no-vignettes --timings metavizr_1.0.2.tar.gz

StartedAt: 2017-08-16 01:08:32 -0400 (Wed, 16 Aug 2017)

EndedAt: 2017-08-16 01:22:37 -0400 (Wed, 16 Aug 2017)

EllapsedTime: 845.2 seconds

RetCode: 0

Status:  OK

CheckDir: metavizr.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf metavizr.buildbin-libdir metavizr.Rcheck && mkdir metavizr.buildbin-libdir metavizr.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=metavizr.buildbin-libdir metavizr_1.0.2.tar.gz >metavizr.Rcheck\00install.out 2>&1 && cp metavizr.Rcheck\00install.out metavizr-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=metavizr.buildbin-libdir --install="check:metavizr-install.out" --force-multiarch --no-vignettes --timings metavizr_1.0.2.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/metavizr.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'metavizr/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'metavizr' version '1.0.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'metavizr' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                              user system elapsed
EpivizMetagenomicsData-class 15.92    0.3   16.25
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                              user system elapsed
EpivizMetagenomicsData-class 19.16   0.09   19.25
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'metavizr' ...
** R
** inst
** preparing package for lazy loading
No methods found in "RSQLite" for requests: dbGetQuery
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
No methods found in "RSQLite" for requests: dbGetQuery

install for x64

* installing *source* package 'metavizr' ...
** testing if installed package can be loaded
No methods found in "RSQLite" for requests: dbGetQuery
* MD5 sums
packaged installation of 'metavizr' as metavizr_1.0.2.zip
* DONE (metavizr)

name	user	system	elapsed
EpivizMetagenomicsData-class	15.92	0.30	16.25
generateSelection	0	0	0
metavizControl	0	0	0
startMetaviz	0.2	0.0	0.2
startMetavizStandalone	0.14	0.00	0.14
validateObject	0.31	0.00	0.31

name	user	system	elapsed
EpivizMetagenomicsData-class	19.16	0.09	19.25
generateSelection	0	0	0
metavizControl	0	0	0
startMetaviz	0.14	0.00	0.14
startMetavizStandalone	0.17	0.00	0.17
validateObject	0.90	0.03	0.94