BioC 3.5: INSTALL report for matter on malbec2

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### Running command:
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###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD INSTALL matter
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* installing to library ‘/home/biocbuild/bbs-3.5-bioc/R/library’
* installing *source* package ‘matter’ ...
** libs
g++  -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c init.cpp -o init.o
g++  -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c matter.cpp -o matter.o
In file included from matter.cpp:4:0:
matter.h: In member function ‘index_t Atoms::write_indices(RType*, Rindex_t*, long int, size_t) [with RType = unsigned char; index_t = long int; Rindex_t = double; size_t = long unsigned int]’:
matter.h:626:20: warning: ‘numWrote’ may be used uninitialized in this function [-Wmaybe-uninitialized]
             return numWrote;
                    ^
matter.h: In member function ‘index_t Atoms::write_indices(RType*, Rindex_t*, long int, size_t) [with RType = int; index_t = long int; Rindex_t = double; size_t = long unsigned int]’:
matter.h:626:20: warning: ‘numWrote’ may be used uninitialized in this function [-Wmaybe-uninitialized]
matter.h: In member function ‘index_t Atoms::write_indices(RType*, Rindex_t*, long int, size_t) [with RType = double; index_t = long int; Rindex_t = double; size_t = long unsigned int]’:
matter.h:626:20: warning: ‘numWrote’ may be used uninitialized in this function [-Wmaybe-uninitialized]
matter.h: In member function ‘index_t Atoms::read_indices(RType*, Rindex_t*, long int, size_t) [with RType = unsigned char; index_t = long int; Rindex_t = double; size_t = long unsigned int]’:
matter.h:603:20: warning: ‘numRead’ may be used uninitialized in this function [-Wmaybe-uninitialized]
             return numRead;
                    ^
matter.h: In member function ‘index_t Atoms::read_indices(RType*, Rindex_t*, long int, size_t) [with RType = int; index_t = long int; Rindex_t = double; size_t = long unsigned int]’:
matter.h:603:20: warning: ‘numRead’ may be used uninitialized in this function [-Wmaybe-uninitialized]
matter.cpp: In function ‘double var(MatterIterator<double>&, bool)’:
matter.cpp:2119:60: warning: ‘s_new’ may be used uninitialized in this function [-Wmaybe-uninitialized]
                 s_new = s_old + (*x - m_old) * (*x - m_new);
                                                            ^
matter.cpp:2118:37: warning: ‘m_new’ may be used uninitialized in this function [-Wmaybe-uninitialized]
                 m_new = m_old + (*x - m_old) / n;
                                     ^
In file included from matter.cpp:4:0:
matter.h: In member function ‘index_t Atoms::read_indices(RType*, Rindex_t*, long int, size_t) [with RType = double; index_t = long int; Rindex_t = double; size_t = long unsigned int]’:
matter.h:603:20: warning: ‘numRead’ may be used uninitialized in this function [-Wmaybe-uninitialized]
             return numRead;
                    ^
g++  -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c utils.cpp -o utils.o
g++ -shared -L/home/biocbuild/bbs-3.5-bioc/R/lib -L/usr/local/lib -o matter.so init.o matter.o utils.o -L/home/biocbuild/bbs-3.5-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.5-bioc/R/library/matter/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for ‘apply’ in package ‘matter’
Creating a new generic function for ‘scale’ in package ‘matter’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (matter)
BioC 3.5: INSTALL report for matter on malbec2

Summary

Command output
