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BioC 3.5: INSTALL report for flowPeaks on tokay2

This page was generated on 2017-08-16 13:21:42 -0400 (Wed, 16 Aug 2017).

Package 462/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowPeaks 1.20.0
Yongchao Ge
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/flowPeaks
Last Changed Rev: 129126 / Revision: 131943
Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: flowPeaks
Version: 1.20.0
Command: rm -rf flowPeaks.buildbin-libdir && mkdir flowPeaks.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/flowPeaks_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=flowPeaks.buildbin-libdir --merge-multiarch flowPeaks_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL flowPeaks_1.20.0.zip && rm flowPeaks_1.20.0.tar.gz flowPeaks_1.20.0.zip
StartedAt: 2017-08-15 18:08:07 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 18:12:36 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 268.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf flowPeaks.buildbin-libdir && mkdir flowPeaks.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/flowPeaks_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=flowPeaks.buildbin-libdir --merge-multiarch flowPeaks_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL flowPeaks_1.20.0.zip  && rm flowPeaks_1.20.0.tar.gz flowPeaks_1.20.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  906k  100  906k    0     0  3450k      0 --:--:-- --:--:-- --:--:-- 3499k

install for i386

* installing *source* package 'flowPeaks' ...
** libs
rm -f flowPeaks.dll Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o
"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386/Rscript.exe" "../tools/winlibs.R"	
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=core2 -c Rpack.cpp -o Rpack.o
Rpack.cpp: In function 'void Rpack_relevel(int*, int*, int*, int*, int*, int*)':
Rpack.cpp:141:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  if(levels.size()<(i+1)){
                  ^
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=core2 -c Rregistrate.cpp -o Rregistrate.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=core2 -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=core2 -c flowPeaks.cpp -o flowPeaks.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=core2 -c func_collect.cpp -o func_collect.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=core2 -c func_collect_supp.cpp -o func_collect_supp.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=core2 -c gvector_gmatrix.cpp -o gvector_gmatrix.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=core2 -c kd_tree.cpp -o kd_tree.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=core2 -c kmns.cpp -o kmns.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o flowPeaks.dll tmp.def Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L../windows/gsl-master/lib-4.9.3/i386 -lgsl -lgslcblas -lm -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/flowPeaks.buildbin-libdir/flowPeaks/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'flowPeaks' ...
** libs
rm -f flowPeaks.dll Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o
"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/x64/Rscript.exe" "../tools/winlibs.R"	
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=core2 -c Rpack.cpp -o Rpack.o
Rpack.cpp: In function 'void Rpack_relevel(int*, int*, int*, int*, int*, int*)':
Rpack.cpp:141:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  if(levels.size()<(i+1)){
                  ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=core2 -c Rregistrate.cpp -o Rregistrate.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=core2 -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=core2 -c flowPeaks.cpp -o flowPeaks.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=core2 -c func_collect.cpp -o func_collect.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=core2 -c func_collect_supp.cpp -o func_collect_supp.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=core2 -c gvector_gmatrix.cpp -o gvector_gmatrix.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=core2 -c kd_tree.cpp -o kd_tree.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG     -I"C:/local323/include"  -I/src/include -I../windows/gsl-master/include/gsl   -O2 -Wall  -mtune=core2 -c kmns.cpp -o kmns.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o flowPeaks.dll tmp.def Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L../windows/gsl-master/lib-4.9.3/x64 -lgsl -lgslcblas -lm -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/flowPeaks.buildbin-libdir/flowPeaks/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowPeaks' as flowPeaks_1.20.0.zip
* DONE (flowPeaks)
* installing to library 'C:/Users/biocbuild/bbs-3.5-bioc/R/library'
package 'flowPeaks' successfully unpacked and MD5 sums checked