Back to the "Multiple platform build/check report" A [B] C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.5: CHECK report for bioassayR on tokay2

This page was generated on 2017-08-16 13:22:43 -0400 (Wed, 16 Aug 2017).

Package 110/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bioassayR 1.14.0
Tyler Backman
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/bioassayR
Last Changed Rev: 129126 / Revision: 131943
Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: bioassayR
Version: 1.14.0
Command: rm -rf bioassayR.buildbin-libdir bioassayR.Rcheck && mkdir bioassayR.buildbin-libdir bioassayR.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=bioassayR.buildbin-libdir bioassayR_1.14.0.tar.gz >bioassayR.Rcheck\00install.out 2>&1 && cp bioassayR.Rcheck\00install.out bioassayR-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=bioassayR.buildbin-libdir --install="check:bioassayR-install.out" --force-multiarch --no-vignettes --timings bioassayR_1.14.0.tar.gz
StartedAt: 2017-08-15 22:13:36 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 22:16:00 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 144.1 seconds
RetCode: 0
Status:  OK  
CheckDir: bioassayR.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf bioassayR.buildbin-libdir bioassayR.Rcheck && mkdir bioassayR.buildbin-libdir bioassayR.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=bioassayR.buildbin-libdir bioassayR_1.14.0.tar.gz >bioassayR.Rcheck\00install.out 2>&1 && cp bioassayR.Rcheck\00install.out bioassayR-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=bioassayR.buildbin-libdir --install="check:bioassayR-install.out" --force-multiarch --no-vignettes --timings bioassayR_1.14.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/bioassayR.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'bioassayR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'bioassayR' version '1.14.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'bioassayR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

bioassayR.Rcheck/00install.out:


install for i386

* installing *source* package 'bioassayR' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for 'organism' in package 'bioassayR'
Creating a new generic function for 'organism<-' in package 'bioassayR'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'bioassayR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'bioassayR' as bioassayR_1.14.0.zip
* DONE (bioassayR)

bioassayR.Rcheck/examples_i386/bioassayR-Ex.timings:

nameusersystemelapsed
BioAssayDB-class000
activeAgainst0.120.020.14
activeTargets0.030.000.03
addBioassayIndex0.020.000.02
addDataSource0.030.000.03
allCids000
allTargets000
assaySetTargets0.080.010.11
bioactivityFingerprint0.140.000.14
bioassay-class0.020.000.02
bioassaySet-class000
connectBioassayDB000
crossReactivityProbability0.220.000.22
disconnectBioassayDB0.020.000.02
dropBioassay0.110.000.10
dropBioassayIndex0.010.020.04
getAssay000
getAssays0.030.000.03
getBioassaySetByCids0.140.000.14
inactiveTargets000
loadBioassay0.150.000.16
loadIdMapping0.000.020.02
newBioassayDB000
parsePubChemBioassay0.020.000.01
perTargetMatrix0.160.000.16
queryBioassayDB0.000.010.01
samplebioassay000
scaleBioassaySet0.030.000.03
screenedAtLeast000
selectiveAgainst0.080.000.08
targetSelectivity0.070.000.08
translateTargetId000
trinarySimilarity0.140.020.16

bioassayR.Rcheck/examples_x64/bioassayR-Ex.timings:

nameusersystemelapsed
BioAssayDB-class000
activeAgainst0.030.000.03
activeTargets0.060.000.06
addBioassayIndex0.020.000.02
addDataSource0.040.010.06
allCids000
allTargets0.020.000.02
assaySetTargets0.20.00.2
bioactivityFingerprint0.240.020.25
bioassay-class0.030.000.03
bioassaySet-class000
connectBioassayDB0.020.000.01
crossReactivityProbability0.410.000.41
disconnectBioassayDB0.000.010.01
dropBioassay0.220.000.22
dropBioassayIndex0.050.000.05
getAssay0.030.000.03
getAssays0.080.000.08
getBioassaySetByCids0.230.000.23
inactiveTargets000
loadBioassay0.310.000.31
loadIdMapping0.000.020.02
newBioassayDB0.020.000.01
parsePubChemBioassay0.010.000.02
perTargetMatrix0.190.020.20
queryBioassayDB0.030.000.03
samplebioassay000
scaleBioassaySet0.030.000.03
screenedAtLeast000
selectiveAgainst0.060.000.06
targetSelectivity0.110.000.11
translateTargetId0.020.000.02
trinarySimilarity0.150.000.15