BioC 3.5: CHECK report for antiProfiles on malbec2

Package: antiProfiles

Version: 1.16.0

Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings antiProfiles_1.16.0.tar.gz

StartedAt: 2017-08-15 21:11:02 -0400 (Tue, 15 Aug 2017)

EndedAt: 2017-08-15 21:11:21 -0400 (Tue, 15 Aug 2017)

EllapsedTime: 18.9 seconds

RetCode: 0

Status:  OK

CheckDir: antiProfiles.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings antiProfiles_1.16.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.5-bioc/meat/antiProfiles.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘antiProfiles/DESCRIPTION’ ... OK
* this is package ‘antiProfiles’ version ‘1.16.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘antiProfiles’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ev: no visible global function definition for ‘predict’
ev: no visible global function definition for ‘smoothScatter’
ev : f1: no visible global function definition for ‘predict’
ev: no visible global function definition for ‘curve’
Undefined global functions or variables:
  curve predict smoothScatter
Consider adding
  importFrom("graphics", "curve", "smoothScatter")
  importFrom("stats", "predict")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.5-bioc/meat/antiProfiles.Rcheck/00check.log’
for details.

* installing *source* package ‘antiProfiles’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (antiProfiles)

name	user	system	elapsed
antiprofile-class	0.584	0.012	1.164
antiprofilestats-class	0.320	0.044	0.363
apCount-methods	0.152	0.000	0.151
apReorder-methods	0.136	0.004	0.141
apStats	0.128	0.000	0.129
buildAntiProfile-methods	0.136	0.000	0.135
ev	0.140	0.000	0.141
tissueSpecAntiprofile-class	0.156	0.004	0.161