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BioC 3.5: BUILD BIN report for VariantTools on tokay2

This page was generated on 2017-08-16 13:21:58 -0400 (Wed, 16 Aug 2017).

Package 1358/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
VariantTools 1.18.1
Michael Lawrence
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/VariantTools
Last Changed Rev: 129867 / Revision: 131943
Last Changed Date: 2017-05-25 13:47:56 -0400 (Thu, 25 May 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: VariantTools
Version: 1.18.1
Command: cd VariantTools.buildbin-libdir/VariantTools && zip -r ../../VariantTools_1.18.1.zip . & cd ../..
StartedAt: 2017-08-16 04:56:10 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 04:56:44 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 33.6 seconds
RetCode: 0
Status:  OK  
PackageFile: VariantTools_1.18.1.zip
PackageFileSize: 12.25 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   cd VariantTools.buildbin-libdir/VariantTools && zip -r ../../VariantTools_1.18.1.zip . & cd ../..
###
##############################################################################
##############################################################################


  adding: data/ (304 bytes security) (stored 0%)
  adding: data/vignette.rda (264 bytes security) (deflated 0%)
  adding: DESCRIPTION (264 bytes security) (deflated 39%)
  adding: doc/ (304 bytes security) (stored 0%)
  adding: doc/fig/ (304 bytes security) (stored 0%)
  adding: doc/fig/bar-caller-freq-summary-dbSNP-count-all.pdf (264 bytes security) (deflated 9%)
  adding: doc/fig/bar-fdr-cov-bin-merged-all.pdf (264 bytes security) (deflated 9%)
  adding: doc/fig/bar-fnr-cov-bin-merged-all.pdf (264 bytes security) (deflated 9%)
  adding: doc/fig/boxplot-altFraction.pdf (264 bytes security) (deflated 8%)
  adding: doc/fig/boxplot-expected-obs-freq-source-merged-vt.pdf (264 bytes security) (deflated 0%)
  adding: doc/fig/boxplot-obs-freq-sample-ceu-all.pdf (264 bytes security) (deflated 0%)
  adding: doc/fig/density-altFraction.pdf (264 bytes security) (deflated 8%)
  adding: doc/fig/dot-percent-recovered-caller-merged-20-all.pdf (264 bytes security) (deflated 11%)
  adding: doc/fig/errors.pdf (264 bytes security) (deflated 5%)
  adding: doc/fig/hist-fdr-rep-count-all.pdf (264 bytes security) (deflated 11%)
  adding: doc/fig/igv_high_cov_neg.png (264 bytes security) (deflated 25%)
  adding: doc/fig/mix.pdf (264 bytes security) (deflated 17%)
  adding: doc/fig/post-filters.pdf (264 bytes security) (deflated 5%)
  adding: doc/fig/variant-calling-filters.pdf (264 bytes security) (deflated 4%)
  adding: doc/fig/VariantCallingProcess.pdf (264 bytes security) (deflated 3%)
  adding: doc/fig/workflow.pdf (264 bytes security) (deflated 3%)
  adding: doc/index.html (264 bytes security) (deflated 64%)
  adding: doc/tutorial.org (264 bytes security) (deflated 67%)
  adding: doc/tutorial.pdf (264 bytes security) (deflated 1%)
  adding: doc/VariantTools.pdf (264 bytes security) (deflated 7%)
  adding: doc/VariantTools.R (264 bytes security) (deflated 82%)
  adding: doc/VariantTools.Rnw (264 bytes security) (deflated 63%)
  adding: help/ (304 bytes security) (stored 0%)
  adding: help/aliases.rds (264 bytes security) (stored 0%)
  adding: help/AnIndex (264 bytes security) (deflated 75%)
  adding: help/paths.rds (264 bytes security) (stored 0%)
  adding: help/VariantTools.rdb (264 bytes security) (deflated 1%)
  adding: help/VariantTools.rdx (264 bytes security) (stored 0%)
  adding: html/ (304 bytes security) (stored 0%)
  adding: html/00Index.html (264 bytes security) (deflated 80%)
  adding: html/R.css (264 bytes security) (deflated 75%)
  adding: INDEX (264 bytes security) (deflated 59%)
  adding: MD5 (264 bytes security) (deflated 46%)
  adding: Meta/ (304 bytes security) (stored 0%)
  adding: Meta/data.rds (264 bytes security) (stored 0%)
  adding: Meta/features.rds (264 bytes security) (stored 0%)
  adding: Meta/hsearch.rds (264 bytes security) (stored 0%)
  adding: Meta/links.rds (264 bytes security) (stored 0%)
  adding: Meta/nsInfo.rds (264 bytes security) (stored 0%)
  adding: Meta/package.rds (264 bytes security) (stored 0%)
  adding: Meta/Rd.rds (264 bytes security) (stored 0%)
  adding: Meta/vignette.rds (264 bytes security) (stored 0%)
  adding: NAMESPACE (264 bytes security) (deflated 57%)
  adding: NEWS (264 bytes security) (deflated 56%)
  adding: R/ (304 bytes security) (stored 0%)
  adding: R/VariantTools (264 bytes security) (deflated 41%)
  adding: R/VariantTools.rdb (264 bytes security) (deflated 31%)
  adding: R/VariantTools.rdx (264 bytes security) (stored 0%)
  adding: unitTests/ (304 bytes security) (stored 0%)
  adding: unitTests/test_calculateConcordanceMatrix.R (264 bytes security) (deflated 57%)
  adding: unitTests/test_idVerify.R (264 bytes security) (deflated 67%)
  adding: unitTests/test_variantConcordance.R (264 bytes security) (deflated 53%)
  adding: vcf/ (304 bytes security) (stored 0%)
  adding: vcf/header.csv (264 bytes security) (deflated 25%)