VariantAnnotation 1.22.3
Valerie Obenchain
| Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/VariantAnnotation | | Last Changed Rev: 130629 / Revision: 131943 | | Last Changed Date: 2017-06-23 01:12:08 -0400 (Fri, 23 Jun 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### cd VariantAnnotation.buildbin-libdir/VariantAnnotation && zip -r ../../VariantAnnotation_1.22.3.zip . & cd ../..
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adding: CITATION (264 bytes security) (deflated 57%)
adding: DESCRIPTION (264 bytes security) (deflated 49%)
adding: doc/ (304 bytes security) (stored 0%)
adding: doc/filterVcf.pdf (264 bytes security) (deflated 10%)
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adding: doc/index.html (264 bytes security) (deflated 68%)
adding: doc/VariantAnnotation.pdf (264 bytes security) (deflated 15%)
adding: doc/VariantAnnotation.R (264 bytes security) (deflated 77%)
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adding: extdata/chr22.vcf.gz.tbi (264 bytes security) (deflated 3%)
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adding: libs/i386/VariantAnnotation.dll (264 bytes security) (deflated 55%)
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adding: R/ (304 bytes security) (stored 0%)
adding: R/VariantAnnotation (264 bytes security) (deflated 41%)
adding: R/VariantAnnotation.rdb (264 bytes security) (deflated 20%)
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adding: scripts/ (304 bytes security) (stored 0%)
adding: scripts/test_Rplinkseq.R (264 bytes security) (deflated 68%)
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adding: unitTests/test_genotypeToSnpMatrix.R (264 bytes security) (deflated 82%)
adding: unitTests/test_isSNV.R (264 bytes security) (deflated 78%)
adding: unitTests/test_locateVariants-methods.R (264 bytes security) (deflated 73%)
adding: unitTests/test_predictCoding-methods.R (264 bytes security) (deflated 77%)
adding: unitTests/test_readVcf-methods.R (264 bytes security) (deflated 75%)
adding: unitTests/test_scanVcf.R (264 bytes security) (deflated 68%)
adding: unitTests/test_ScanVcfParam-class.R (264 bytes security) (deflated 73%)
adding: unitTests/test_SIFTandPolyPhen.R (264 bytes security) (deflated 66%)
adding: unitTests/test_snpSummary.R (264 bytes security) (deflated 66%)
adding: unitTests/test_summarizeVariants-methods.R (264 bytes security) (deflated 49%)
adding: unitTests/test_VCF-class.R (264 bytes security) (deflated 78%)
adding: unitTests/test_VRanges-class.R (264 bytes security) (deflated 76%)
adding: unitTests/test_writeVcf-methods.R (264 bytes security) (deflated 79%)