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BioC 3.5: BUILD BIN report for SamSPECTRAL on toluca2

This page was generated on 2017-04-23 14:35:07 -0400 (Sun, 23 Apr 2017).

Package 1173/1377HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SamSPECTRAL 1.29.10
Habil Zare
Snapshot Date: 2017-04-22 17:18:01 -0400 (Sat, 22 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/SamSPECTRAL
Last Changed Rev: 128691 / Revision: 129046
Last Changed Date: 2017-04-13 21:24:06 -0400 (Thu, 13 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
toluca2 Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS [ OK ]
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: SamSPECTRAL
Version: 1.29.10
Command: rm -rf SamSPECTRAL.buildbin-libdir && mkdir SamSPECTRAL.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SamSPECTRAL_1.29.10.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R SamSPECTRAL.buildbin-libdir
StartedAt: 2017-04-23 12:42:24 -0400 (Sun, 23 Apr 2017)
EndedAt: 2017-04-23 12:42:39 -0400 (Sun, 23 Apr 2017)
EllapsedTime: 15.0 seconds
RetCode: 0
Status:  OK 
PackageFile: SamSPECTRAL_1.29.10.tgz
PackageFileSize: 781.6 KiB

Command output

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###
### Running command:
###
###   rm -rf SamSPECTRAL.buildbin-libdir && mkdir SamSPECTRAL.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SamSPECTRAL_1.29.10.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R SamSPECTRAL.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=SamSPECTRAL.buildbin-libdir SamSPECTRAL_1.29.10.tar.gz'
>>>>>>> 

* installing *source* package ‘SamSPECTRAL’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c Rinit.c -o Rinit.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c conductance_computation.c -o conductance_computation.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c maximum_of_rows.c -o maximum_of_rows.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o SamSPECTRAL.so Rinit.o conductance_computation.o maximum_of_rows.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.5-bioc/meat/SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (SamSPECTRAL)


>>>>>>> 
>>>>>>> FIXING LINKS FOR SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs//SamSPECTRAL.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs//SamSPECTRAL.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs//SamSPECTRAL.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs//SamSPECTRAL.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs//SamSPECTRAL.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "SamSPECTRAL.buildbin-libdir/SamSPECTRAL/libs//SamSPECTRAL.so"