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BioC 3.5: INSTALL report for SNPRelate on malbec2

This page was generated on 2017-08-16 13:15:59 -0400 (Wed, 16 Aug 2017).

Package 1243/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SNPRelate 1.10.2
Xiuwen Zheng
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/SNPRelate
Last Changed Rev: 129923 / Revision: 131943
Last Changed Date: 2017-05-26 20:09:00 -0400 (Fri, 26 May 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64 [ OK ] OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: SNPRelate
Version: 1.10.2
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD INSTALL SNPRelate
StartedAt: 2017-08-15 18:00:27 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 18:00:48 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 21.2 seconds
RetCode: 0
Status:  OK 

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD INSTALL SNPRelate
###
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* installing to library ‘/home/biocbuild/bbs-3.5-bioc/R/library’
* installing *source* package ‘SNPRelate’ ...
** libs
g++  -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -DUSING_R -I. -I"/home/biocbuild/bbs-3.5-bioc/R/library/gdsfmt/include" -I/usr/local/include   -fpic  -g -O2  -Wall -c ConvToGDS.cpp -o ConvToGDS.o
gcc -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -DUSING_R -I. -I"/home/biocbuild/bbs-3.5-bioc/R/library/gdsfmt/include" -I/usr/local/include   -fpic  -g -O2  -Wall -c R_SNPRelate.c -o R_SNPRelate.o
g++  -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -DUSING_R -I. -I"/home/biocbuild/bbs-3.5-bioc/R/library/gdsfmt/include" -I/usr/local/include   -fpic  -g -O2  -Wall -c SNPRelate.cpp -o SNPRelate.o
g++  -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -DUSING_R -I. -I"/home/biocbuild/bbs-3.5-bioc/R/library/gdsfmt/include" -I/usr/local/include   -fpic  -g -O2  -Wall -c ThreadPool.cpp -o ThreadPool.o
g++  -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -DUSING_R -I. -I"/home/biocbuild/bbs-3.5-bioc/R/library/gdsfmt/include" -I/usr/local/include   -fpic  -g -O2  -Wall -c dGenGWAS.cpp -o dGenGWAS.o
g++  -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -DUSING_R -I. -I"/home/biocbuild/bbs-3.5-bioc/R/library/gdsfmt/include" -I/usr/local/include   -fpic  -g -O2  -Wall -c dVect.cpp -o dVect.o
g++  -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -DUSING_R -I. -I"/home/biocbuild/bbs-3.5-bioc/R/library/gdsfmt/include" -I/usr/local/include   -fpic  -g -O2  -Wall -c genBeta.cpp -o genBeta.o
g++  -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -DUSING_R -I. -I"/home/biocbuild/bbs-3.5-bioc/R/library/gdsfmt/include" -I/usr/local/include   -fpic  -g -O2  -Wall -c genEIGMIX.cpp -o genEIGMIX.o
g++  -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -DUSING_R -I. -I"/home/biocbuild/bbs-3.5-bioc/R/library/gdsfmt/include" -I/usr/local/include   -fpic  -g -O2  -Wall -c genFst.cpp -o genFst.o
g++  -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -DUSING_R -I. -I"/home/biocbuild/bbs-3.5-bioc/R/library/gdsfmt/include" -I/usr/local/include   -fpic  -g -O2  -Wall -c genHWE.cpp -o genHWE.o
g++  -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -DUSING_R -I. -I"/home/biocbuild/bbs-3.5-bioc/R/library/gdsfmt/include" -I/usr/local/include   -fpic  -g -O2  -Wall -c genIBD.cpp -o genIBD.o
g++  -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -DUSING_R -I. -I"/home/biocbuild/bbs-3.5-bioc/R/library/gdsfmt/include" -I/usr/local/include   -fpic  -g -O2  -Wall -c genIBS.cpp -o genIBS.o
g++  -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -DUSING_R -I. -I"/home/biocbuild/bbs-3.5-bioc/R/library/gdsfmt/include" -I/usr/local/include   -fpic  -g -O2  -Wall -c genKING.cpp -o genKING.o
g++  -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -DUSING_R -I. -I"/home/biocbuild/bbs-3.5-bioc/R/library/gdsfmt/include" -I/usr/local/include   -fpic  -g -O2  -Wall -c genLD.cpp -o genLD.o
g++  -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -DUSING_R -I. -I"/home/biocbuild/bbs-3.5-bioc/R/library/gdsfmt/include" -I/usr/local/include   -fpic  -g -O2  -Wall -c genPCA.cpp -o genPCA.o
g++  -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -DUSING_R -I. -I"/home/biocbuild/bbs-3.5-bioc/R/library/gdsfmt/include" -I/usr/local/include   -fpic  -g -O2  -Wall -c genSlideWin.cpp -o genSlideWin.o
g++ -shared -L/home/biocbuild/bbs-3.5-bioc/R/lib -L/usr/local/lib -o SNPRelate.so ConvToGDS.o R_SNPRelate.o SNPRelate.o ThreadPool.o dGenGWAS.o dVect.o genBeta.o genEIGMIX.o genFst.o genHWE.o genIBD.o genIBS.o genKING.o genLD.o genPCA.o genSlideWin.o -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.5-bioc/R/lib -lRblas -L/home/biocbuild/bbs-3.5-bioc/R/lib -lRlapack -lpthread -L/home/biocbuild/bbs-3.5-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.5-bioc/R/library/SNPRelate/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (SNPRelate)