BioC 3.5: CHECK report for RTNduals on toluca2

Package: RTNduals

Version: 0.99.4

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings RTNduals_0.99.4.tar.gz

StartedAt: 2017-04-23 09:28:14 -0400 (Sun, 23 Apr 2017)

EndedAt: 2017-04-23 09:31:29 -0400 (Sun, 23 Apr 2017)

EllapsedTime: 195.1 seconds

RetCode: 0

Status:  OK

CheckDir: RTNduals.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings RTNduals_0.99.4.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.5-bioc/meat/RTNduals.Rcheck’
* using R Under development (unstable) (2017-02-15 r72187)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RTNduals/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RTNduals’ version ‘0.99.4’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RTNduals’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                           user system elapsed
mbrAssociation-methods    8.905  0.361   9.308
mbrPlotDuals              7.630  0.304   7.953
tni2mbrPreprocess-methods 7.111  0.250   7.377
mbrDuals-methods          7.041  0.296   7.347
mbrDpiFilter-methods      6.568  0.244   6.819
mbrBootstrap-methods      5.963  0.259   6.229
mbrPermutation-methods    5.336  0.225   5.571
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘RTNduals’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RTNduals)

name	user	system	elapsed
mbrAssociation-methods	8.905	0.361	9.308
mbrBootstrap-methods	5.963	0.259	6.229
mbrDpiFilter-methods	6.568	0.244	6.819
mbrDuals-methods	7.041	0.296	7.347
mbrGet-methods	2.762	0.090	2.854
mbrPermutation-methods	5.336	0.225	5.571
mbrPlotDuals	7.630	0.304	7.953
mbrPreprocess-methods	2.498	0.068	2.569
tni2mbrPreprocess-methods	7.111	0.250	7.377