PureCN 1.6.3
Markus Riester
| Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/PureCN | | Last Changed Rev: 129925 / Revision: 131943 | | Last Changed Date: 2017-05-26 22:47:22 -0400 (Fri, 26 May 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | [ OK ] | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### cd PureCN.buildbin-libdir/PureCN && zip -r ../../PureCN_1.6.3.zip . & cd ../..
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adding: CITATION (264 bytes security) (deflated 58%)
adding: data/ (304 bytes security) (stored 0%)
adding: data/centromeres.rda (264 bytes security) (stored 0%)
adding: data/purecn.example.output.rda (264 bytes security) (deflated 0%)
adding: DESCRIPTION (264 bytes security) (deflated 44%)
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adding: doc/index.html (264 bytes security) (deflated 66%)
adding: doc/PureCN.pdf (264 bytes security) (deflated 9%)
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adding: extdata/ (304 bytes security) (stored 0%)
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adding: extdata/downloadCentromeres.R (264 bytes security) (deflated 55%)
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adding: extdata/example_gc.gene.file.txt (264 bytes security) (deflated 70%)
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adding: extdata/IntervalFile.R (264 bytes security) (deflated 57%)
adding: extdata/NormalDB.R (264 bytes security) (deflated 65%)
adding: extdata/PureCN.R (264 bytes security) (deflated 74%)
adding: extdata/test_coverage_overlapping_intervals.txt (264 bytes security) (deflated 55%)
adding: help/ (304 bytes security) (stored 0%)
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adding: help/PureCN.rdb (264 bytes security) (deflated 1%)
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adding: NEWS (264 bytes security) (deflated 55%)
adding: R/ (304 bytes security) (stored 0%)
adding: R/PureCN (264 bytes security) (deflated 41%)
adding: R/PureCN.rdb (264 bytes security) (deflated 0%)
adding: R/PureCN.rdx (264 bytes security) (stored 0%)
adding: unitTests/ (304 bytes security) (stored 0%)
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adding: unitTests/test_bootstrapResults.R (264 bytes security) (deflated 66%)
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adding: unitTests/test_createNormalDatabase.R (264 bytes security) (deflated 73%)
adding: unitTests/test_filterVcf.R (264 bytes security) (deflated 66%)
adding: unitTests/test_findFocal.R (264 bytes security) (deflated 48%)
adding: unitTests/test_getDiploid.R (264 bytes security) (deflated 52%)
adding: unitTests/test_getSexFromCoverage.R (264 bytes security) (deflated 71%)
adding: unitTests/test_getSexFromVcf.R (264 bytes security) (deflated 37%)
adding: unitTests/test_poolCoverage.R (264 bytes security) (deflated 65%)
adding: unitTests/test_predictSomatic.R (264 bytes security) (deflated 62%)
adding: unitTests/test_readCoverageFile.R (264 bytes security) (deflated 55%)
adding: unitTests/test_runAbsoluteCN.R (264 bytes security) (deflated 81%)
adding: unitTests/test_setMappingBiasVcf.R (264 bytes security) (deflated 52%)
adding: unitTests/test_setPriorVcf.R (264 bytes security) (deflated 44%)